Mercurial > repos > bgruening > deeptools_bam_coverage
view tool_dependencies.xml.orig @ 17:0e335fe39725 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c-dirty
author | bgruening |
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date | Thu, 10 Mar 2016 02:49:48 -0500 |
parents | 892146aaf356 |
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<?xml version='1.0' encoding='utf-8'?> <tool_dependency> <package name="numpy" version="1.9"> <repository name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" /> </package> <package name="pybigwig" version="0.2.4"> <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc" prior_installation_required="True"/> </package> <package name="matplotlib" version="1.4"> <repository name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" /> </package> <package name="scipy" version="0.14"> <repository name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" /> </package> <<<<<<< HEAD <package name="deepTools" version="2.0.1"> <repository name="package_python_2_7_deeptools_2_0_1" owner="iuc"/> ======= <package name="pysam" version="0.8.3"> <repository name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" /> </package> <package name="bx-python" version="0.7.2"> <repository name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" /> </package> <package name="python" version="2.7.10"> <repository name="package_python_2_7_10" owner="iuc" prior_installation_required="True" /> >>>>>>> d56067f86089e75354a2fad266002db3730766d9 </package> <package name="deepTools" version="2.1.0"> <install version="1.0"> <actions> <action type="setup_python_environment"> <repository name="package_python_2_7_10" owner="iuc"> <package name="python" version="2.7.10" /> </repository> <repository name="package_python_2_7_pysam_0_8_3" owner="iuc"> <package name="pysam" version="0.8.3" /> </repository> <repository name="package_python_2_7_numpy_1_9" owner="iuc"> <package name="numpy" version="1.9" /> </repository> <repository name="package_python_2_7_matplotlib_1_4" owner="iuc"> <package name="matplotlib" version="1.4" /> </repository> <repository name="package_python_2_7_scipy_0_14" owner="iuc"> <package name="scipy" version="0.14" /> </repository> <repository name="package_python_2_7_bx_python_0_7" owner="iuc"> <package name="bx-python" version="0.7.2" /> </repository> <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc"> <package name="pybigwig" version="0.2.4" /> </repository> <package sha256sum="3bf835afde02cd5247198db3e01f690899e1fdb86e1821a83ac940d807baa857">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.1.0.tar.gz</package> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable> <environment_variable name="DEEPTOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> <environment_variable name="DEEPTOOLS_PYTHONPATH" action="set_to">$INSTALL_DIR</environment_variable> <environment_variable name="DEEPTOOLS_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable> <!-- libpng lib path --> <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> <!-- disable the config file of deepTools --> <environment_variable name="DEEP_TOOLS_NO_CONFIG" action="set_to">TRUE</environment_variable> </action> </actions> </install> <readme> Installation of deepTools from Fidel Ramirez. https://github.com/fidelram/deepTools </readme> </package> </tool_dependency>