Mercurial > repos > bgruening > deeptools_bam_coverage
diff deepTools_macros.xml @ 42:0d2ba04b8261 draft default tip
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 810c1359b884661d3f5c7372be0f0f88c859a3b9
| author | bgruening |
|---|---|
| date | Thu, 01 Jun 2023 10:23:48 +0000 |
| parents | a4ecef241a6d |
| children |
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--- a/deepTools_macros.xml Fri Feb 11 10:46:30 2022 +0000 +++ b/deepTools_macros.xml Thu Jun 01 10:23:48 2023 +0000 @@ -1,10 +1,11 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.5.1.0</token> + <token name="@TOOL_VERSION@">3.5.2</token> + <token name="@GALAXY_VERSION@">20.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.5.1">deeptools</requirement> + <requirement type="package" version="@TOOL_VERSION@">deeptools</requirement> <requirement type="package" version="1.9">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -368,7 +369,6 @@ <xml name="pseudocount"> <param argument="--pseudocount" type="text" value="1 1" label="Pseudocount" help="Small number to avoid dividing by zero. You can specify separate values for the pseudocount added to the numerator and denominator by providing two values separated by a space."/> </xml> - <token name="@REFERENCES@"> .. class:: infomark @@ -483,7 +483,7 @@ <token name="@multiple_input_bams@"> <![CDATA[ #if $custom_sample_labels_conditional.custom_labels_select == "Yes": - #set custom_labels=labels + #set custom_labels=$custom_sample_labels_conditional.labels #end if #set files=[] #set labels=[] @@ -498,7 +498,7 @@ ln -s '${bamfile.metadata.cram_index}' './${counter}.bam.crai' && #end if #silent $files.append("'%s.bam'" % $counter) - #silent $labels.append("'%s'" % identifier) + #silent $labels.append("'%s'" % $identifier) #end for #else: #for $counter, $f in enumerate($multibam_conditional.multibam_repeats): @@ -522,7 +522,7 @@ <token name="@multiple_input_bigwigs@"> <![CDATA[ #if $custom_sample_labels_conditional.custom_labels_select == "Yes": - #set custom_labels=labels + #set custom_labels=$custom_sample_labels_conditional.labels #end if #set files=[] #set labels=[]