Mercurial > repos > bgruening > deeptools_bam_compare

diff bamCompare.xml @ 1:c9bd31657605 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 4fc171a2e9d37ef865695a04ff1b12068d8fe427
author bgruening
date Fri, 18 Dec 2015 08:01:29 -0500
parents bf9a64491821
children 7aa5951c56b7
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line diff
--- a/bamCompare.xml	Wed Dec 16 16:41:47 2015 -0500
+++ b/bamCompare.xml	Fri Dec 18 08:01:29 2015 -0500
@@ -60,7 +60,7 @@
                 #end if
 
                 @ADVANCED_OPTS_READ_PROCESSING@
-                $advancedOpt.keepNAs
+                $advancedOpt.skipNAs
 
                 #if str($advancedOpt.ignoreForNormalization).strip() != '':
                     --ignoreForNormalization '$advancedOpt.ignoreForNormalization'
@@ -153,7 +153,7 @@
                 <expand macro="smoothLength" />
                 <expand macro="read_processing_options" />
 
-                <expand macro="keepNAs" />
+                <expand macro="skipNAs" />
                 <param argument="--ignoreForNormalization" type="text" value="" size="50"
                     label="regions that should be excluded for calculating the scaling factor"
                     help="Sometimes it makes sense to exclude certain regions when calculating the scaling factor.