Mercurial > repos > bgruening > deeptools

changeset 33:fc3830717e24 draft

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Uploaded
author bgruening
date Tue, 28 Jan 2014 16:30:41 -0500
parents 3f2096404113
children 934b9fccabd4
files bamCompare.xml bamCorrelate.xml bamCoverage.xml bamFingerprint.xml bigwigCompare.xml computeGCBias.xml computeMatrix.xml correctGCBias.xml heatmapper.xml profiler.xml
diffstat 10 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/bamCompare.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/bamCompare.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_bamCompare" name="bamCompare" version="1.0.2">
+<tool id="deeptools_bamCompare" name="bamCompare" version="1.0.3">
     <description>normalizes and compares two BAM files to obtain the ratio, log2ratio or difference. (bam2bigwig)</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
--- a/bamCorrelate.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/bamCorrelate.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_bamCorrelate" name="bamCorrelate" version="1.0.2">
+<tool id="deeptools_bamCorrelate" name="bamCorrelate" version="1.0.3">
     <description>correlates pairs of BAM files</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
--- a/bamCoverage.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/bamCoverage.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_bamCoverage" name="bamCoverage" version="1.0.2">
+<tool id="deeptools_bamCoverage" name="bamCoverage" version="1.0.3">
     <description> generates a coverage bigWig file from a given BAM file.  Multiple options are available to count reads and normalize coverage. (bam2bigwig)</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
--- a/bamFingerprint.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/bamFingerprint.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_bamFingerprint" name="bamFingerprint" version="1.0.2">
+<tool id="deeptools_bamFingerprint" name="bamFingerprint" version="1.0.3">
     <description>plots profiles of BAM files; useful for assesing ChIP signal strength</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
--- a/bigwigCompare.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/bigwigCompare.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_bigwigCompare" name="bigwigCompare" version="1.0.2">
+<tool id="deeptools_bigwigCompare" name="bigwigCompare" version="1.0.3">
     <description>normalizes and compares two bigWig files to obtain the ratio, log2ratio or difference</description>
     <expand macro="requirements"/>
     <expand macro="stdio" />
--- a/computeGCBias.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/computeGCBias.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_computeGCBias" name="computeGCBias" version="1.0.2">
+<tool id="deeptools_computeGCBias" name="computeGCBias" version="1.0.3">
     <description>to see whether your samples should be normalized for GC bias</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
--- a/computeMatrix.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/computeMatrix.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_computeMatrix" name="computeMatrix" version="1.0.2">
+<tool id="deeptools_computeMatrix" name="computeMatrix" version="1.0.3">
     <description>summarizes and prepares an intermediary file containing scores associated with genomic regions that can be used afterwards to plot a heatmap or a profile</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
--- a/correctGCBias.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/correctGCBias.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_correctGCBias" name="correctGCBias" version="1.0.2">
+<tool id="deeptools_correctGCBias" name="correctGCBias" version="1.0.3">
     <description>uses the output from computeGCBias to generate corrected BAM files</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
--- a/heatmapper.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/heatmapper.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_heatmapper" name="heatmapper" version="1.0.2">
+<tool id="deeptools_heatmapper" name="heatmapper" version="1.0.3">
     <description>creates a heatmap for a score associated to genomic regions</description>
     <expand macro="requirements"/>
     <expand macro="stdio" />
--- a/profiler.xml	Tue Jan 28 16:28:52 2014 -0500
+++ b/profiler.xml	Tue Jan 28 16:30:41 2014 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_profiler" name="profiler" version="1.0.2">
+<tool id="deeptools_profiler" name="profiler" version="1.0.3">
     <description>
         creates a profile plot for a score associated to genomic regions
     </description>