# HG changeset patch
# User bgruening
# Date 1396369918 14400
# Node ID 7d6d2f91843e89ecbd002d9666e168fa913def44
# Parent  b5abf7b4296b10c5e5ee23303bafac9c72b9000a
Uploaded

diff -r b5abf7b4296b -r 7d6d2f91843e deepTools_macros.xml
--- a/deepTools_macros.xml	Tue Apr 01 06:25:05 2014 -0400
+++ b/deepTools_macros.xml	Tue Apr 01 12:31:58 2014 -0400
@@ -51,7 +51,7 @@
             <requirement type="package" >samtools</requirement>
             <requirement type="package" >deepTools</requirement>
             <requirement type="package" >ucsc_tools</requirement>
-            <requirement type="package" version="1.5.8_5a68f50918b35a647ebff0f84d962677d15656a0">deepTools</requirement>
+            <requirement type="package" version="1.5.8_09023018b96c23f922aa2ea553090e9df8ecf41e">deepTools</requirement>
             <requirement type="package" version="0.1">ucsc_tools</requirement>
             <requirement type="package" version="1.7.1">numpy</requirement>
             <requirement type="package" version="0.7.7">pysam</requirement>
@@ -67,9 +67,9 @@
     <xml name="kmeans_clustering">
         <conditional name="used_multiple_regions">
             <param name="used_multiple_regions_options" type="select" 
-                label="Did you use multiple regions in computeMatrix?"
+                label="Did you compute the matrix with more than one groups of regions?"
                 help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions.">
-                <option value="yes">Yes, I used multiple regions.</option>
+                <option value="yes">Yes, I used multiple groups of regions</option>
                 <option value="no">No, I used only one region.</option>
             </param>
             <when value="no">
diff -r b5abf7b4296b -r 7d6d2f91843e tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Apr 01 06:25:05 2014 -0400
+++ b/tool_dependencies.xml	Tue Apr 01 12:31:58 2014 -0400
@@ -57,7 +57,7 @@
          <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
      </package>
 
-    <package name="deepTools" version="1.5.8_5a68f50918b35a647ebff0f84d962677d15656a0">
+    <package name="deepTools" version="1.5.8_09023018b96c23f922aa2ea553090e9df8ecf41e">
         <install version="1.0">
             <actions>
                 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
@@ -79,7 +79,7 @@
                         <package name="scipy" version="0.12.0" />
                     </repository>
                 </action>
-                <action type="shell_command">git reset --hard 5a68f50918b35a647ebff0f84d962677d15656a0</action>
+                <action type="shell_command">git reset --hard 09023018b96c23f922aa2ea553090e9df8ecf41e</action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="shell_command">
                     export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;