diff correctGCBias.xml @ 45:b9feca1f07f0 draft

Uploaded

--- a/correctGCBias.xml	Tue Feb 04 09:11:10 2014 -0500
+++ b/correctGCBias.xml	Mon Mar 31 17:48:50 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="deeptools_correctGCBias" name="correctGCBias" version="1.0.4">
+<tool id="deeptools_correctGCBias" name="correctGCBias" version="@WRAPPER_VERSION@.0">
     <description>uses the output from computeGCBias to generate corrected BAM files</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
@@ -45,6 +45,7 @@
         ##--correctedFile $newoutFileName;
         --correctedFile "corrected.bam";
 
+        ##mv $newoutFileName $outFileName
         mv "corrected.bam" $outFileName
     </command>
     <inputs>
@@ -71,7 +72,7 @@
             <when value="yes">
                 <param name="binSize" type="integer" value="50" min="1" 
                     label="Bin size in bp"
-                    help="Size of the bins in bp for the ouput of the bigwig/bedgraph file."/>
+                    help="Size of the bins in bp for the output of the bigwig/bedgraph file."/>
             </when>
         </conditional>
     </inputs>