diff heatmapper.xml @ 30:2e5b92e7f3cb draft

Uploaded

--- a/heatmapper.xml	Sat Dec 21 17:30:26 2013 -0500
+++ b/heatmapper.xml	Tue Jan 28 13:54:34 2014 -0500
@@ -147,7 +147,6 @@
 
                 <param name="whatToShow" type="select" label="What to show" help ="The default is to include a summary or profile plot on top of the heatmap and a heatmap colorbar.">
                     <option value="plot, heatmap and colorbar" selected="true">summary plot, heatmap and colorbar</option>
-                    <option value="plot only">summary plot only</option>
                     <option value="plot and heatmap">summary plot and heatmap (no colorbar)</option>
                     <option value="heatmap only">heatmap only</option>
                     <option value="heatmap and colorbar">heatmap and colorbar</option>
@@ -174,11 +173,11 @@
                 <conditional name="used_multiple_regions">
                     <param name="used_multiple_regions_options" type="select" 
                         label="Did you used multiple regions in ComputeMatrix?"
-                        help="That option is only relevant if you want to cluster the results. Clustering is only available with one selected region in ComputeMatrix.">
-                        <option value="no">No, I used only one region.</option>
+                        help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions.">
                         <option value="yes">Yes, I used multiple regions.</option>
+                        <option value="no">No, I used only one region.</option>
                     </param>
-                    <when value="yes">
+                    <when value="no">
                         <conditional name="clustering">
                             <param name="clustering_options" type="select" label="Clustering algorithm">
                                 <option value="none">No clustering</option>
@@ -191,7 +190,7 @@
                             <when value="none" />
                         </conditional>
                     </when>
-                    <when value="no" />
+                    <when value="yes" />
                 </conditional>
             </when>
         </conditional>