diff deepTools_macros.xml @ 49:1d802a322244 draft

Uploaded

--- a/deepTools_macros.xml	Tue Aug 26 13:48:56 2014 -0400
+++ b/deepTools_macros.xml	Wed Sep 10 04:06:39 2014 -0400
@@ -44,14 +44,14 @@
     </xml>
     
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">1.5.8.2</token>
+    <token name="@WRAPPER_VERSION@">1.5.9.1</token>
     <xml name="requirements">
         <requirements>
             <requirement type="binary">@BINARY@</requirement>
             <requirement type="package" >samtools</requirement>
             <requirement type="package" >deepTools</requirement>
             <requirement type="package" >ucsc_tools</requirement>
-            <requirement type="package" version="1.5.8.2">deepTools</requirement>
+            <requirement type="package" version="1.5.9.1">deepTools</requirement>
             <requirement type="package" version="0.1">ucsc_tools</requirement>
             <requirement type="package" version="1.7.1">numpy</requirement>
             <requirement type="package" version="0.7.7">pysam</requirement>
@@ -232,6 +232,12 @@
         </param>
     </xml>
 
+    <xml name="missingDataAsZero">
+                <param name="missingDataAsZero" type="boolean" truevalue="yes" falsevalue="no" checked="True"
+                    label ="Treat missing data as zero"
+                    help  ="This parameter determines if missing data should be treated as zeros. If unchecked, missing data will be ignored and not included in the output file. Missing data is defined as those regions for which both BAM files have 0 reads." />
+    </xml>
+
     <xml name="input_save_matrix_values">
         <param name="saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/>
     </xml>