Mercurial > repos > bgruening > deeptools
comparison profiler.xml @ 36:ea2f64efe70d draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 31 Jan 2014 05:12:41 -0500 |
| parents | 934b9fccabd4 |
| children | 2f7edf06a5da |
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| 35:7766dfcd2455 | 36:ea2f64efe70d |
|---|---|
| 62 | 62 |
| 63 --xAxisLabel '$advancedOpt.xAxisLabel' | 63 --xAxisLabel '$advancedOpt.xAxisLabel' |
| 64 #if str($advancedOpt.yAxisLabel.value) != "None": | 64 #if str($advancedOpt.yAxisLabel.value) != "None": |
| 65 --yAxisLabel '$advancedOpt.yAxisLabel' | 65 --yAxisLabel '$advancedOpt.yAxisLabel' |
| 66 #end if | 66 #end if |
| 67 | |
| 68 @kmeans_clusterin@ | |
| 69 | |
| 67 #end if | 70 #end if |
| 68 </command> | 71 </command> |
| 69 <inputs> | 72 <inputs> |
| 70 <param name="matrixFile" format="bgzip" type="data" label="Matrix file from the computeMatrix tool"/> | 73 <param name="matrixFile" format="bgzip" type="data" label="Matrix file from the computeMatrix tool"/> |
| 71 <conditional name="scaleRegions"> | 74 <conditional name="scaleRegions"> |
| 121 <param name="onePlotPerGroup" type="boolean" truevalue="--onePlotPerGroup" falsevalue="" label="Do one plot per group" help="When the region file contains groups separated by "#", the default is to plot the averages for the distinct plots in one plot. If this option is set, each group will get its own plot, stacked on top of each other."/> | 124 <param name="onePlotPerGroup" type="boolean" truevalue="--onePlotPerGroup" falsevalue="" label="Do one plot per group" help="When the region file contains groups separated by "#", the default is to plot the averages for the distinct plots in one plot. If this option is set, each group will get its own plot, stacked on top of each other."/> |
| 122 <param name="yMin" type="float" value="" size="3" label="Minimum value for the Y-axis of the summary plot. Leave empty for automatic values" optional="true"/> | 125 <param name="yMin" type="float" value="" size="3" label="Minimum value for the Y-axis of the summary plot. Leave empty for automatic values" optional="true"/> |
| 123 <param name="yMax" type="float" value="" size="3" label="Maximum value for Y-axis of the summary plot. Leave empty for automatic values" optional="true"/> | 126 <param name="yMax" type="float" value="" size="3" label="Maximum value for Y-axis of the summary plot. Leave empty for automatic values" optional="true"/> |
| 124 <param name="xAxisLabel" type="text" value="gene distance (bp)" size="50" label="Description for the x-axis label" /> | 127 <param name="xAxisLabel" type="text" value="gene distance (bp)" size="50" label="Description for the x-axis label" /> |
| 125 <param name="yAxisLabel" type="text" value="" size="50" label="Description for the y-axis label for the top panel" /> | 128 <param name="yAxisLabel" type="text" value="" size="50" label="Description for the y-axis label for the top panel" /> |
| 129 | |
| 130 <expand macro="kmeans_clustering" /> | |
| 131 | |
| 126 </when> | 132 </when> |
| 127 </conditional> | 133 </conditional> |
| 128 </inputs> | 134 </inputs> |
| 129 <outputs> | 135 <outputs> |
| 130 <expand macro="output_image_file_format" /> | 136 <expand macro="output_image_file_format" /> |