comparison deepTools_macros.xml @ 25:df9f0dbb1d2a draft

Uploaded

24:e43b4015b4cc

            <exit_code range=":-1" />
            <exit_code range="0" level="warning" description="Warning" />
            <regex match="Error:" />
            <regex match="Exception:" />
            <regex match="EXception:" />
        </stdio>
    </macro>
    <token name="@REFERENCES@">

For more informations, please visit our `project site`_.

                <option value="no" selected="true">no</option>
                <option value="yes">yes</option>
            </param>
            <when value="no" />
            <when value="yes">
                <param name="outFileFormat" type="select" label="Image file format">
                    <option value="png" selected="true">png</option>
                    <option value="pdf">pdf</option>
                    <option value="svg">svg</option>
                    <option value="eps">eps</option>
                    <option value="emf">emf</option>
                </param>
                <param name="saveData" type="boolean" label="Save the data underlying data for the average profile"/>
                <param name="saveMatrix" type="boolean" label="Save the the matrix of values underlying the heatmap"/>
                <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/>
            </when>
        </conditional>
    </macro>

    <macro name="output_graphic_outputs">
        <data format="png" name="outFileName" label="${tool.name} image">
            <change_format>
                <when input="output.outFileFormat" value="pdf" format="pdf" />
                <when input="output.outFileFormat" value="svg" format="svg" />
                <when input="output.outFileFormat" value="eps" format="eps" />
                <when input="output.outFileFormat" value="emf" format="emf" />
            </change_format>
        </data>
        <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column">
            <filter>
            ((
                output['showOutputSettings'] == 'yes' and 
                output['saveData'] is True

25:df9f0dbb1d2a

            <exit_code range=":-1" />
            <exit_code range="0" level="warning" description="Warning" />
            <regex match="Error:" />
            <regex match="Exception:" />
            <regex match="EXception:" />
            <regex match="Traceback" />
        </stdio>
    </macro>
    <token name="@REFERENCES@">

For more informations, please visit our `project site`_.

                <option value="no" selected="true">no</option>
                <option value="yes">yes</option>
            </param>
            <when value="no" />
            <when value="yes">
                <yield />
                <param name="saveData" type="boolean" label="Save the data underlying data for the average profile"/>
                <param name="saveMatrix" type="boolean" label="Save the the matrix of values underlying the heatmap"/>
                <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/>
            </when>
        </conditional>
    </macro>

    <macro name="input_image_file_format">
        <param name="outFileFormat" type="select" label="Image file format">
            <option value="png" selected="true">png</option>
            <option value="pdf">pdf</option>
            <option value="svg">svg</option>
            <option value="eps">eps</option>
            <option value="emf">emf</option>
        </param>
    </macro>

    <macro name="output_image_file_format">
        <data format="png" name="outFileName" label="${tool.name} image">
            <change_format>
                <when input="output.outFileFormat" value="pdf" format="pdf" />
                <when input="output.outFileFormat" value="svg" format="svg" />
                <when input="output.outFileFormat" value="eps" format="eps" />
                <when input="output.outFileFormat" value="emf" format="emf" />
            </change_format>
        </data>
    </macro>

    <macro name="output_graphic_outputs">
        <yield />
        <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column">
            <filter>
            ((
                output['showOutputSettings'] == 'yes' and 
                output['saveData'] is True