Mercurial > repos > bgruening > deeptools

comparison tool_dependencies.xml @ 6:c5847db0cb41 draft

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author bgruening
date Wed, 14 Aug 2013 07:18:18 -0400
parents 522686bcd5c0
children 77487c05ffc7
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5:1f312af2f8db 6:c5847db0cb41
40 </actions> 40 </actions>
41 </install> 41 </install>
42 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme> 42 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
43 </package> 43 </package>
44 44
45 <package name="deepTools" version="1.5.1_59e067cce039cb93add04823c9f51cab202f8c2b"> 45 <package name="deepTools" version="1.5.1_df852fa1ef13251a17274ee18fbf919fbc515079">
46 <install version="1.0"> 46 <install version="1.0">
47 <actions> 47 <actions>
48 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> 48 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
49 <action type="shell_command">git reset --hard 59e067cce039cb93add04823c9f51cab202f8c2b</action> 49 <action type="shell_command">git reset --hard df852fa1ef13251a17274ee18fbf919fbc515079</action>
50 <action type="make_directory">$INSTALL_DIR/lib/python</action> 50 <action type="make_directory">$INSTALL_DIR/lib/python</action>
51 <action type="shell_command"> 51 <action type="shell_command">
52 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 52 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
53 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 53 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
54 </action> 54 </action>