comparison tool_dependencies.xml @ 47:7d6d2f91843e draft

Uploaded

46:b5abf7b4296b

             </actions>
         </install>
         <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
     </package>

    <package name="deepTools" version="1.5.8_5a68f50918b35a647ebff0f84d962677d15656a0">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">

                    </repository>
                    <repository changeset_revision="4b2ef8519550" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.12.0" />
                    </repository>
                </action>
                <action type="shell_command">git reset --hard 5a68f50918b35a647ebff0f84d962677d15656a0</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>

47:7d6d2f91843e

             </actions>
         </install>
         <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
     </package>

    <package name="deepTools" version="1.5.8_09023018b96c23f922aa2ea553090e9df8ecf41e">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">

                    </repository>
                    <repository changeset_revision="4b2ef8519550" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.12.0" />
                    </repository>
                </action>
                <action type="shell_command">git reset --hard 09023018b96c23f922aa2ea553090e9df8ecf41e</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>