comparison deepTools_macros.xml @ 47:7d6d2f91843e draft

Uploaded

46:b5abf7b4296b

        <requirements>
            <requirement type="binary">@BINARY@</requirement>
            <requirement type="package" >samtools</requirement>
            <requirement type="package" >deepTools</requirement>
            <requirement type="package" >ucsc_tools</requirement>
            <requirement type="package" version="1.5.8_5a68f50918b35a647ebff0f84d962677d15656a0">deepTools</requirement>
            <requirement type="package" version="0.1">ucsc_tools</requirement>
            <requirement type="package" version="1.7.1">numpy</requirement>
            <requirement type="package" version="0.7.7">pysam</requirement>
            <requirement type="package" version="0.12.0">scipy</requirement>
            <requirement type="package" version="1.2.1">matplotlib</requirement>

    </xml>

    <xml name="kmeans_clustering">
        <conditional name="used_multiple_regions">
            <param name="used_multiple_regions_options" type="select" 
                label="Did you use multiple regions in computeMatrix?"
                help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions.">
                <option value="yes">Yes, I used multiple regions.</option>
                <option value="no">No, I used only one region.</option>
            </param>
            <when value="no">
                <conditional name="clustering">
                    <param name="clustering_options" type="select" label="Clustering algorithm">

47:7d6d2f91843e

        <requirements>
            <requirement type="binary">@BINARY@</requirement>
            <requirement type="package" >samtools</requirement>
            <requirement type="package" >deepTools</requirement>
            <requirement type="package" >ucsc_tools</requirement>
            <requirement type="package" version="1.5.8_09023018b96c23f922aa2ea553090e9df8ecf41e">deepTools</requirement>
            <requirement type="package" version="0.1">ucsc_tools</requirement>
            <requirement type="package" version="1.7.1">numpy</requirement>
            <requirement type="package" version="0.7.7">pysam</requirement>
            <requirement type="package" version="0.12.0">scipy</requirement>
            <requirement type="package" version="1.2.1">matplotlib</requirement>

    </xml>

    <xml name="kmeans_clustering">
        <conditional name="used_multiple_regions">
            <param name="used_multiple_regions_options" type="select" 
                label="Did you compute the matrix with more than one groups of regions?"
                help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions.">
                <option value="yes">Yes, I used multiple groups of regions</option>
                <option value="no">No, I used only one region.</option>
            </param>
            <when value="no">
                <conditional name="clustering">
                    <param name="clustering_options" type="select" label="Clustering algorithm">