Mercurial > repos > bgruening > deeptools

comparison tool_dependencies.xml @ 9:73761f33f198 draft

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author bgruening
date Tue, 17 Sep 2013 10:27:29 -0400
parents b4ed2153f75c
children a68a771625d2
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8:b4ed2153f75c 9:73761f33f198
43 </actions> 43 </actions>
44 </install> 44 </install>
45 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme> 45 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
46 </package> 46 </package>
47 47
48 <package name="deepTools" version="1.5.1_df852fa1ef13251a17274ee18fbf919fbc515079"> 48 <package name="deepTools" version="1.5.1_3e13687c89e951476776b15afb4bbbc3b906f761">
49 <install version="1.0"> 49 <install version="1.0">
50 <actions> 50 <actions>
51 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> 51 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
52 <action type="shell_command">git reset --hard df852fa1ef13251a17274ee18fbf919fbc515079</action> 52 <action type="shell_command">git reset --hard 3e13687c89e951476776b15afb4bbbc3b906f761</action>
53 <action type="make_directory">$INSTALL_DIR/lib/python</action> 53 <action type="make_directory">$INSTALL_DIR/lib/python</action>
54 <action type="shell_command"> 54 <action type="shell_command">
55 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 55 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
56 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 56 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
57 </action> 57 </action>