comparison computeGCBias.xml @ 37:2f7edf06a5da draft

Uploaded

36:ea2f64efe70d

usually shows a significant bias towards reads with high GC content (>50%)

.. image:: $PATH_TO_IMAGES/QC_GCplots_input.png


**Output files**:

- Diagnostic plot

  - box plot of absolute read numbers per genomic GC bin

  - to be used for GC correction with correctGCbias


-----

.. class:: infomark

@REFERENCES@

    </help>
</tool>

37:2f7edf06a5da

usually shows a significant bias towards reads with high GC content (>50%)

.. image:: $PATH_TO_IMAGES/QC_GCplots_input.png


You can find more details in the `computeGCBias wiki`_.

.. _computeGCBias wiki: https://github.com/fidelram/deepTools/wiki/QC#wiki-computeGCbias


**Output files**:

- Diagnostic plot

  - box plot of absolute read numbers per genomic GC bin

  - to be used for GC correction with correctGCbias


-----

@REFERENCES@

    </help>
</tool>