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comparison deepTools_macros.xml @ 63:07513cab0338 draft

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Uploaded
author bgruening
date Thu, 26 Feb 2015 11:04:18 -0500
parents f3140d17939e
children 9bee2c86eeb1
comparison
equal deleted inserted replaced
62:1d932daaa198 63:07513cab0338
29 <param name="region" type="text" value="" 29 <param name="region" type="text" value=""
30 label="Region of the genome to limit the operation to" 30 label="Region of the genome to limit the operation to"
31 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example &quot;chr10&quot; or &quot;chr10:456700:891000&quot;. (--region)" /> 31 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example &quot;chr10&quot; or &quot;chr10:456700:891000&quot;. (--region)" />
32 </xml> 32 </xml>
33 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> 33 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
34 <token name="@WRAPPER_VERSION@">1.5.9.1</token> 34 <token name="@WRAPPER_VERSION@">1.5.9.2</token>
35 <xml name="requirements"> 35 <xml name="requirements">
36 <requirements> 36 <requirements>
37 <requirement type="binary">@BINARY@</requirement> 37 <requirement type="binary">@BINARY@</requirement>
38 <requirement type="package" >samtools</requirement>
39 <requirement type="package" >deepTools</requirement> 38 <requirement type="package" >deepTools</requirement>
40 <requirement type="package" >ucsc_tools</requirement> 39 <requirement type="package" version="1.5.9">deepTools</requirement>
41 <requirement type="package" version="2.7">python</requirement>
42 <requirement type="package" version="1.5.9.1">deepTools</requirement>
43 <requirement type="package" version="0.1">ucsc_tools</requirement>
44 <requirement type="package" version="1.9">numpy</requirement>
45 <requirement type="package" version="0.8.1">pysam</requirement>
46 <requirement type="package" version="0.14">scipy</requirement>
47 <requirement type="package" version="1.4">matplotlib</requirement>
48 <requirement type="package" version="0.1.19">samtools</requirement>
49 <requirement type="package" version="0.7.2">bx-python</requirement>
50 <yield /> 40 <yield />
51 </requirements> 41 </requirements>
52 <version_command>@BINARY@ --version</version_command> 42 <version_command>@BINARY@ --version</version_command>
53 </xml> 43 </xml>
54 44