Mercurial > repos > bgruening > data_manager_diamond_database_builder

diff data_manager_conf.xml @ 11:1b449216bf00 draft

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author bgruening
date Sun, 08 Feb 2015 04:08:15 -0500
parents 5a613b179173
children cd9e4ee63761
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--- a/data_manager_conf.xml	Sun Feb 08 04:04:23 2015 -0500
+++ b/data_manager_conf.xml	Sun Feb 08 04:08:15 2015 -0500
@@ -7,10 +7,10 @@
                 <column name="name" />
                 <column name="db_path" output_ref="out_file" >
                     <move type="directory" relativize_symlinks="True">
-                        <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
+                        <!-- <source>${db_path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">diamond_database/${value}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/diamond_database/${value}/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/diamond_database/${value}/${db_path}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>