view tool_dependencies.xml @ 25:9d019ccaa0e3 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/confab commit 4a60df09ddf9dfcedad80f7b72a927198da2f755

<?xml version="1.0"?>
<tool_dependency>
    <package name="eigen2" version="2.0.17">
        <repository changeset_revision="53adc55e10f2" name="package_eigen_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="confab" version="1.0.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/bgruening/confab/archive/1.0.1.tar.gz</action>

                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">
                    <repository changeset_revision="53adc55e10f2" name="package_eigen_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="eigen2" version="2.0.17" />
                    </repository>
                </action>

                <action type="shell_command">cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN2_INCLUDE_DIR=$EIGEN2_SOURCE_PATH</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="BABEL_DATADIR">$INSTALL_DIR/share/openbabel</environment_variable>
                    <environment_variable action="set_to" name="BABEL_LIBDIR">$INSTALL_DIR/lib/openbabel/2.2.99</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling Confab requires g++, CMake 2.4+. Optional but required for a few features is libxml2 and zlib.</readme>
    </package>
</tool_dependency>