diff column_arrange.py @ 0:b84c81b7d762 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/column_arrange.py	Mon Mar 02 09:59:32 2015 -0500
@@ -0,0 +1,20 @@
+#!/usr/bin/env python 
+import pandas as pd
+import argparse
+
+
+parser = argparse.ArgumentParser()
+parser.add_argument('-i', '--input', help='Tabular Input File Name')
+parser.add_argument('-o','--output', help='Tabular Output File')
+parser.add_argument('-c', '--columns',nargs='+', help='Column Headers to Sort By')
+args=parser.parse_args()
+
+cols=args.columns
+table=pd.read_csv(args.input,sep='\t')
+blist = list(table.columns)
+for token in cols:
+    blist.remove(token)
+sorted_table = table[args.columns + blist]
+# write without index, seperated by tabs
+sorted_table.to_csv(args.output,sep='\t',index=False)
+