Mercurial > repos > bgruening > cleanlab

annotate cleanlab_issue_handler.xml @ 0:ecc18228c32e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
author bgruening
date Wed, 28 May 2025 11:30:39 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
1 <tool id="cleanlab_issue_handler" name="Cleanlab Issue Handler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
2 <description>Detect and optionally clean data issues using Cleanlab</description>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
3 <macros>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
4 <token name="@TOOL_VERSION@">2.7.1</token>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
5 <token name="@VERSION_SUFFIX@">1.0</token>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
6 </macros>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
7
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
8 <requirements>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
9 <requirement type="package" version="2.7.1">cleanlab</requirement>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
10 <requirement type="package" version="3.6.0">datasets</requirement>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
11 <requirement type="package" version="3.0.0">xgboost</requirement>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
12 </requirements>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
13
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
14 <command detect_errors="exit_code"><![CDATA[
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
15 python '${__tool_directory__}/cleanlab_issue_handler.py'
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
16 --input_file '$input_file' '$input_file.ext'
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
17 --target_column '$target_column'
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
18 --task "$task_block.task"
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
19 --method "$task_block.method"
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
20 #if $summary_only:
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
21 --summary
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
22 #end if
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
23 #if str($task_block.task) == "classification":
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
24 $task_block.label_issues
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
25 $task_block.outliers
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
26 $task_block.near_duplicates
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
27 $task_block.non_iid
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
28 #elif str($task_block.task) == "regression":
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
29 --quality-threshold "$task_block.quality_threshold"
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
30 #end if
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
31 ]]></command>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
32
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
33 <inputs>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
34 <param name="input_file" type="data" format="csv,tsv,tabular" label="Input data file"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
35 <param name="target_column" type="text" optional="false" label="Target column name" value="target" help="Name of the target column in the input data file. Default is 'target'."/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
36 <param name="summary_only" type="boolean" label="Only generate summary report?" checked="false"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
37
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
38 <conditional name="task_block">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
39 <param name="task" type="select" label="Task type">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
40 <option value="classification">Classification</option>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
41 <option value="regression">Regression</option>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
42 </param>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
43
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
44 <when value="classification">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
45 <param name="method" type="select" label="Cleaning method">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
46 <option value="remove">Remove problematic rows</option>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
47 <option value="replace">Replace problematic labels (classification only)</option>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
48 </param>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
49 <param name="label_issues" type="boolean" truevalue="" falsevalue="--no-label-issues" label="Remove/Replace label issues" checked="true"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
50 <param name="outliers" type="boolean" truevalue="" falsevalue="--no-outliers" label="Remove/Replace outlier issues" checked="true"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
51 <param name="near_duplicates" type="boolean" truevalue="" falsevalue="--no-near-duplicates" label="Remove/Replace near-duplicate issues" checked="true"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
52 <param name="non_iid" type="boolean" truevalue="" falsevalue="--no-non-iid" label="Remove/Replace non-IID issues" checked="true"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
53 </when>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
54
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
55 <when value="regression">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
56 <param name="method" type="select" label="Cleaning method">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
57 <option value="remove">Remove problematic rows</option>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
58 <!-- No "replace" option for regression -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
59 </param>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
60 <param name="quality_threshold" type="float" label="Quality threshold" value="0.2" min="0.0" max="1.0" help="Threshold for low-quality labels. Default is 0.2."/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
61 <!-- No issue type parameters shown -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
62 </when>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
63 </conditional>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
64 </inputs>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
65
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
66 <outputs>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
67 <data name="report_file" from_work_dir="summary.txt" format="txt" label="Issue Report"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
68
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
69 <data name="output_file" from_work_dir="cleaned_data" format_source="input_file" label="cleaned_${input_file.name}">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
70 <filter>not summary_only</filter>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
71 </data>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
72 </outputs>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
73
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
74 <tests>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
75 <!-- Test1: only summary -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
76 <test expect_num_outputs="1">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
77 <param name="input_file" value="breast_cancer.csv" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
78 <param name="target_column" value="target" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
79 <param name="summary_only" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
80
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
81 <conditional name="task_block">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
82 <param name="task" value="classification" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
83 <param name="method" value="remove" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
84 <param name="label_issues" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
85 <param name="outliers" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
86 <param name="near_duplicates" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
87 <param name="non_iid" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
88 </conditional>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
89
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
90 <output name="report_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
91 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
92 <has_text_matching expression="issue_type\s+score\s+num_issues"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
93 <has_text_matching expression="label\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
94 <has_text_matching expression="outlier\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
95 <has_text_matching expression="non_iid\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
96 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
97 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
98 </test>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
99
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
100 <!-- Test2: summary and cleaned all -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
101 <test expect_num_outputs="2">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
102 <param name="input_file" value="breast_cancer.csv" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
103 <param name="target_column" value="target" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
104 <param name="summary_only" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
105
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
106 <conditional name="task_block">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
107 <param name="task" value="classification" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
108 <param name="method" value="remove" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
109 <param name="label_issues" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
110 <param name="outliers" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
111 <param name="near_duplicates" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
112 <param name="non_iid" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
113 </conditional>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
114
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
115 <output name="report_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
116 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
117 <has_text_matching expression="issue_type\s+score\s+num_issues"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
118 <has_text_matching expression="label\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
119 <has_text_matching expression="outlier\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
120 <has_text_matching expression="non_iid\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
121 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
122 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
123
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
124 <output name="output_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
125 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
126 <has_text_matching expression=".*target.*"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
127 <has_text_matching expression="^.*,.+,.+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
128 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
129 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
130 </test>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
131
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
132 <!-- Test3: summary and cleaned label issues only -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
133 <test expect_num_outputs="2">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
134 <param name="input_file" value="breast_cancer.csv" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
135 <param name="target_column" value="target" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
136 <param name="summary_only" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
137
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
138 <conditional name="task_block">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
139 <param name="task" value="classification" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
140 <param name="method" value="remove" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
141 <param name="label_issues" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
142 <param name="outliers" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
143 <param name="near_duplicates" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
144 <param name="non_iid" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
145 </conditional>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
146
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
147 <output name="report_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
148 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
149 <has_text_matching expression="label\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
150 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
151 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
152
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
153 <output name="output_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
154 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
155 <has_text_matching expression=".*target.*"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
156 <has_text_matching expression="^.*,.+,.+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
157 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
158 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
159 </test>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
160
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
161 <!-- Test4: summary and cleaned outliers only -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
162 <test expect_num_outputs="2">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
163 <param name="input_file" value="breast_cancer.csv" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
164 <param name="target_column" value="target" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
165 <param name="summary_only" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
166
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
167 <conditional name="task_block">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
168 <param name="task" value="classification" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
169 <param name="method" value="remove" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
170 <param name="label_issues" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
171 <param name="outliers" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
172 <param name="near_duplicates" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
173 <param name="non_iid" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
174 </conditional>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
175
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
176 <output name="report_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
177 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
178 <has_text_matching expression="outlier\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
179 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
180 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
181
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
182 <output name="output_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
183 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
184 <has_text_matching expression=".*target.*"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
185 <has_text_matching expression="^.*,.+,.+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
186 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
187 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
188 </test>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
189
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
190 <!-- Test5: summary and clean all for tsv -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
191 <test expect_num_outputs="2">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
192 <param name="input_file" value="breast_cancer.tsv" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
193 <param name="target_column" value="target" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
194 <param name="summary_only" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
195
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
196 <conditional name="task_block">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
197 <param name="task" value="classification" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
198 <param name="method" value="remove" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
199 <param name="label_issues" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
200 <param name="outliers" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
201 <param name="near_duplicates" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
202 <param name="non_iid" value="true" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
203 </conditional>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
204
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
205 <output name="report_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
206 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
207 <has_text_matching expression="issue_type\s+score\s+num_issues"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
208 <has_text_matching expression="label\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
209 <has_text_matching expression="outlier\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
210 <has_text_matching expression="non_iid\s+(0(\.\d+)?|1(\.0+)?)\s+\d+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
211 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
212 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
213
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
214 <output name="output_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
215 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
216 <has_text_matching expression=".*target.*"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
217 <has_text_matching expression="^.*\t.+\t.+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
218 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
219 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
220 </test>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
221
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
222 <!-- Test6: regression with summary and cleaned output -->
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
223 <test expect_num_outputs="2">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
224 <param name="input_file" value="reg_1027_ESL.csv" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
225 <param name="target_column" value="target" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
226 <param name="summary_only" value="false" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
227
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
228 <conditional name="task_block">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
229 <param name="task" value="regression" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
230 <param name="method" value="remove" />
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
231 </conditional>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
232
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
233 <output name="report_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
234 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
235 <has_text text="Regression Issue Summary:"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
236 <has_text_matching expression="Num low quality:"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
237 <has_text_matching expression="Mean label quality:"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
238 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
239 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
240
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
241 <output name="output_file">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
242 <assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
243 <has_text_matching expression=".*target.*"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
244 <has_text_matching expression="^.*,.+,.+"/>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
245 </assert_contents>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
246 </output>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
247 </test>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
248 </tests>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
249
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
250 <help><![CDATA[
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
251 **Cleanlab Issue Handler**
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
252
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
253 This Galaxy tool identifies and optionally removes or corrects data issues in supervised learning datasets using the [Cleanlab](https://cleanlab.io/) Python library. It supports **classification** and **regression** tasks and helps improve dataset quality by detecting label errors, outliers, near-duplicate entries, and non-IID samples.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
254
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
255 The tool internally fits a cross-validated model (e.g., via XGBoost) to estimate label quality and identify problematic samples. These issues can be summarized in a report, and optionally addressed via removal or correction (depending on task and selected method).
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
256
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
257 --------------------
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
258
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
259 **Detected Issue Types (with technical examples)**
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
260
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
261 - **Label Issues**
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
262 These are samples whose label in the dataset is likely incorrect.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
263 **Example:** In a medical classification dataset, a patient's record is labeled as "benign," but its feature pattern is highly similar to correctly labeled "malignant" cases.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
264
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
265
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
266 - **Outliers**
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
267 Points that are statistically distant from the rest of the dataset.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
268 **Example**: An entry with unusually high or low feature values (e.g., several standard deviations away from the mean).
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
269
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
270 - **Near-Duplicates**
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
271 Highly similar or repeated samples.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
272 **Example**: Two rows with nearly identical features and labels — possibly a duplication or copy artifact.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
273
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
274 - **Non-IID Samples** *(classification only)*
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
275 Samples that violate the assumption of independent and identically distributed data.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
276 **Example**: A subset from a different population source (e.g., a different hospital or device) introducing distributional shift.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
277
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
278 --------------------
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
279
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
280 **Parameters**
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
281
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
282 - **Input file**: Tabular file (CSV/TSV) with a `target` column.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
283 - **Task type**: `classification` or `regression`.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
284 - **Method**: `remove` (delete problematic rows) or `replace` (correct labels — classification only).
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
285 - **Only report issues**: If checked, input data is unchanged; only a summary report is produced.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
286 - **Issue types**: Choose which issues to detect and handle.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
287 - **Quality threshold** *(regression only)*: A float between 0.0 and 1.0 that determines how aggressively the tool flags low-quality labels in regression. Labels with quality scores below this threshold will be removed.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
288
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
289 --------------------
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
290
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
291 **Outputs**
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
292
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
293 - **summary.txt**: Report listing each issue type, confidence score, and number of affected rows.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
294 - **cleaned_data**: Cleaned dataset (CSV/TSV), only produced if "Only report issues" is unchecked.
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
295
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
296 ]]></help>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
297
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
298 <citations>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
299 <citation type="bibtex">
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
300 @inproceedings{northcutt2021confident,
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
301 title={Confident learning: Estimating uncertainty in dataset labels},
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
302 author={Northcutt, Curtis G and Jiang, Lu and Chuang, Alex},
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
303 booktitle={Journal of Artificial Intelligence Research},
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
304 year={2021},
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
305 volume={70},
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
306 pages={1373--1411}
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
307 }
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
308 </citation>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
309 </citations>
ecc18228c32e planemo upload for repository https://github.com/cleanlab/cleanlab commit ac4753a61ee908bc2a5953b6c6d38d2bbbacc6c0
bgruening
parents:
diff changeset
310 </tool>