view jmoleditor/jmoleditor.xml @ 2:4254e2bd6bc0

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<tool id="jmoleditor" name="JMol Editor" tool_type="data_source">
    <description>A Chemical Structure Editor</description>
    <command interpreter="python">jmoleditor.py $output</command>
    <inputs action="http://localhost:8000/Jmoleditor/editor.htm" check_values="false" method="GET">
        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
        <param name="URL" type="hidden" value="http://localhost:8000/Jmoleditor/editor.htm" />
        <param name="tool_id" type="hidden" value="jmoleditor" />
    </inputs>
    <request_param_translation>
        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
        <request_param galaxy_name="URL" remote_name="URL" missing="" />
        <request_param galaxy_name="galaxyData" remote_name="galaxyData" missing="?" />
        <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
        <request_param galaxy_name="output_label" remote_name="data_type" missing="txt" >
            <value_translation>
                <value galaxy_value="Molecule" remote_value="mol" />
                <value galaxy_value="SMILES" remote_value="smi" />
            </value_translation>
        </request_param>
    </request_param_translation>
    <uihints minwidth="800"/>
    <outputs>
        <data name="output" format="smi" label='imported ${output_label} file'>
            <change_format>
                <when input="output_label" value="SMILES" format="smi"/>
            </change_format>
        </data>
    </outputs>
    <options sanitize="False" refresh="True"/>
    <help>

**What it does**

Paint your strucutre and load it into a Galaxy history.


    </help>
</tool>