# HG changeset patch # User bgruening # Date 1564482601 14400 # Node ID 50c594522ed2fe6dbdd599ce0ef42d56ca38633f # Parent b52b7fdefd72846ab4b06f27b0ae36e6a9976da2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit b9780e368b2e46dc541a846519ccc9593226ee0d diff -r b52b7fdefd72 -r 50c594522ed2 bismark2report_wrapper.xml --- a/bismark2report_wrapper.xml Wed Jun 05 07:43:45 2019 -0400 +++ b/bismark2report_wrapper.xml Tue Jul 30 06:30:01 2019 -0400 @@ -1,9 +1,9 @@ - + Generates a graphical HTML report page from report outputs of Bismark - bismark + bismark samtools - bowtie2 + bowtie2 + Bisulfite reads mapper - bismark + bismark samtools - bowtie2 + bowtie2 - + @@ -427,6 +457,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + diff -r b52b7fdefd72 -r 50c594522ed2 bismark_deduplicate_wrapper.xml --- a/bismark_deduplicate_wrapper.xml Wed Jun 05 07:43:45 2019 -0400 +++ b/bismark_deduplicate_wrapper.xml Tue Jul 30 06:30:01 2019 -0400 @@ -1,9 +1,9 @@ - + Deduplicates reads mapped by Bismark - bismark + bismark samtools - bowtie2 + bowtie2 + Reports on methylation status of reads mapped by Bismark - bismark + bismark samtools - bowtie2 + bowtie2 - Bismark Processing Report - /private/var/folders/cf/k7c5rjhj1sggk6x8z1jnw4b80000gp/T/tmpDiq_J8/files/000/dataset_2.dat + Bismark Processing Report - input_1.fq.gz