Mercurial > repos > bgruening > bismark
view tool_dependencies.xml @ 7:63d9e369c669 draft
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author | bgruening |
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date | Thu, 18 Oct 2012 04:06:44 -0400 |
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children | fe920bac76dd |
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<?xml version="1.0"?> <tool_dependency> <package name="bowtie2" version="2.0.0-beta7"> <install version="1.0"> <actions> <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.0.0-beta7/bowtie2-2.0.0-beta7-source.zip</action> <action type="shell_command">make</action> <action type="move_file"> <source>bowtie2</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> <source>bowtie2-align</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> Compiling bowtie2 requires zlib and libpthread to be present on your system. </readme> </package> <package name="bismark" version="0.7.7"> <install version="1.0"> <set_environment version="1.0"> <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable> </set_environment> </install> <readme> bismark, bismark_genome_preparation and bismark_methylation_extractor are shipped with that wrapper </readme> </package> </tool_dependency>