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#This is a sample file distributed with Galaxy that enables tools
#to use a directory of Bismark indexed sequences data files. You will
#need to create these data files and then create a bismark_indices.loc
#file similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The bismark_indices.loc
#file has this format (longer white space characters are TAB characters):
#
#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>
#
#So, for example, if you had hg19 indexed stored in
#/data/galaxy/bismark/hg19/,
#then the bismark_indices.loc entry would look like this:
#
#hg19	hg19	hg19	/data/galaxy/bismark/hg19/
#
#and your /data/galaxy/bismark/hg19/ directory has the following structure
#
# Bisulfite_Genome/CT_conversion/BS_CT*.bt2
# Bisulfite_Genome/GA_conversion/BS_GA*.bt2
#
#plus the hg19 FASTA files.
#