Mercurial > repos > bgruening > bismark
diff README @ 17:73508c5b4273 draft
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| author | bgruening |
|---|---|
| date | Sun, 24 Feb 2013 14:49:36 -0500 |
| parents | 221e740377ca |
| children |
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--- a/README Mon Feb 18 16:07:12 2013 -0500 +++ b/README Sun Feb 24 14:49:36 2013 -0500 @@ -1,8 +1,5 @@ Bismark uses Bowtie or Bowtie2 to map the reads. -Create your reference index with bismark_genome_preparation in your -normal Bowtie2/Botwie index directory. -bismark_genome_preparation will create a Bisulfite_Genome folder directly in -your Bowtie2/Bowtie index directory. If you follow that approach you do not -need to specify or modify an extra *.loc file. -That wrapper will extract the path to the Bisulfite_Genome folder from -./tool-data/bowtie2_indices.loc or ./tool-data/bowtie_indices.loc. + +Create your reference index with bismark_genome_preparation in your normal Bowtie2/Botwie index directory. +bismark_genome_preparation will create a Bisulfite_Genome folder directly in your Bowtie2/Bowtie index directory. If you follow that approach you do not need to specify or modify an extra *.loc file. +That wrapper will extract the path to the Bisulfite_Genome folder from ./tool-data/bowtie2_indices.loc or ./tool-data/bowtie_indices.loc.