Mercurial > repos > bgruening > bismark

comparison test-data/summary.txt @ 32:c5003e3c507d draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit ec1f38df34e6862abd0b8e7cc0521e25f9933567
author bgruening
date Thu, 01 Aug 2019 10:46:45 -0400
parents 50c594522ed2
children
comparison
equal deleted inserted replaced
31:45b1a9520fa9 32:c5003e3c507d
77 Entering Ebwt loop 77 Entering Ebwt loop
78 Getting block 1 of 1 78 Getting block 1 of 1
79 No samples; assembling all-inclusive block 79 No samples; assembling all-inclusive block
80 Sorting block of length 756159 for bucket 1 80 Sorting block of length 756159 for bucket 1
81 (Using difference cover) 81 (Using difference cover)
82 Sorting block time: 00:00:00 82 Sorting block time: xxxx
83 Returning block of 756160 for bucket 1 83 Returning block of 756160 for bucket 1
84 Exited Ebwt loop 84 Exited Ebwt loop
85 fchr[A]: 0 85 fchr[A]: 0
86 fchr[C]: 235897 86 fchr[C]: 235897
87 fchr[G]: 235897 87 fchr[G]: 235897
116 numLines: 3939 116 numLines: 3939
117 ebwtTotLen: 252096 117 ebwtTotLen: 252096
118 ebwtTotSz: 252096 118 ebwtTotSz: 252096
119 color: 0 119 color: 0
120 reverse: 0 120 reverse: 0
121 Total time for call to driver() for forward index: 00:00:00 121 Total time for call to driver() for forward index: xxxx
122 Reading reference sizes 122 Reading reference sizes
123 Time reading reference sizes: 00:00:00 123 Time reading reference sizes: 00:00:00
124 Calculating joined length 124 Calculating joined length
125 Writing header 125 Writing header
126 Reserving space for joined string 126 Reserving space for joined string
160 Entering Ebwt loop 160 Entering Ebwt loop
161 Getting block 1 of 1 161 Getting block 1 of 1
162 No samples; assembling all-inclusive block 162 No samples; assembling all-inclusive block
163 Sorting block of length 756159 for bucket 1 163 Sorting block of length 756159 for bucket 1
164 (Using difference cover) 164 (Using difference cover)
165 Sorting block time: 00:00:01 165 Sorting block time: xxxx
166 Returning block of 756160 for bucket 1 166 Returning block of 756160 for bucket 1
167 Exited Ebwt loop 167 Exited Ebwt loop
168 fchr[A]: 0 168 fchr[A]: 0
169 fchr[C]: 235897 169 fchr[C]: 235897
170 fchr[G]: 235897 170 fchr[G]: 235897
262 Entering Ebwt loop 262 Entering Ebwt loop
263 Getting block 1 of 1 263 Getting block 1 of 1
264 No samples; assembling all-inclusive block 264 No samples; assembling all-inclusive block
265 Sorting block of length 756159 for bucket 1 265 Sorting block of length 756159 for bucket 1
266 (Using difference cover) 266 (Using difference cover)
267 Sorting block time: 00:00:00 267 Sorting block time: xxxx
268 Returning block of 756160 for bucket 1 268 Returning block of 756160 for bucket 1
269 Exited Ebwt loop 269 Exited Ebwt loop
270 fchr[A]: 0 270 fchr[A]: 0
271 fchr[C]: 386401 271 fchr[C]: 386401
272 fchr[G]: 533276 272 fchr[G]: 533276
301 numLines: 3939 301 numLines: 3939
302 ebwtTotLen: 252096 302 ebwtTotLen: 252096
303 ebwtTotSz: 252096 303 ebwtTotSz: 252096
304 color: 0 304 color: 0
305 reverse: 0 305 reverse: 0
306 Total time for call to driver() for forward index: 00:00:00 306 Total time for call to driver() for forward index: xxxx
307 Reading reference sizes 307 Reading reference sizes
308 Time reading reference sizes: 00:00:00 308 Time reading reference sizes: 00:00:00
309 Calculating joined length 309 Calculating joined length
310 Writing header 310 Writing header
311 Reserving space for joined string 311 Reserving space for joined string
345 Entering Ebwt loop 345 Entering Ebwt loop
346 Getting block 1 of 1 346 Getting block 1 of 1
347 No samples; assembling all-inclusive block 347 No samples; assembling all-inclusive block
348 Sorting block of length 756159 for bucket 1 348 Sorting block of length 756159 for bucket 1
349 (Using difference cover) 349 (Using difference cover)
350 Sorting block time: 00:00:01 350 Sorting block time: xxxx
351 Returning block of 756160 for bucket 1 351 Returning block of 756160 for bucket 1
352 Exited Ebwt loop 352 Exited Ebwt loop
353 fchr[A]: 0 353 fchr[A]: 0
354 fchr[C]: 386401 354 fchr[C]: 386401
355 fchr[G]: 533276 355 fchr[G]: 533276
485 C methylated in CHG context: 2.8% 485 C methylated in CHG context: 2.8%
486 C methylated in CHH context: 1.8% 486 C methylated in CHH context: 1.8%
487 C methylated in Unknown context (CN or CHN): 16.7% 487 C methylated in Unknown context (CN or CHN): 16.7%
488 488
489 489
490 Bismark completed in 0d 0h 0m 8s 490 Bismark completed in xxxx
491 491
492 ==================== 492 ====================
493 Bismark run complete 493 Bismark run complete
494 ==================== 494 ====================
495