# HG changeset patch
# User bgruening
# Date 1741357506 0
# Node ID ff80c1b5816be29cb7ecdb943211c0be5d9dece7
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 2723029a5b134c68a21432cc8256ee1e5e111a00
diff -r 000000000000 -r ff80c1b5816b biaftplink.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/biaftplink.xml Fri Mar 07 14:25:06 2025 +0000
@@ -0,0 +1,88 @@
+
+ Download images from Bioimage Archive
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+ macros.xml
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+> ftpLink.txt &&
+ wget -q -r -l 0 -A "*.tif,*.png,*.jpg,*.zip" -i ftpLink.txt &&
+
+ find . -type f -name "*.zip" | while read zip_file; do
+ unzip -o "\$zip_file" -d "\$(dirname "\$zip_file")";
+ done
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+]]>
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+ ftplink_output
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diff -r 000000000000 -r ff80c1b5816b macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Fri Mar 07 14:25:06 2025 +0000
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+ 0.2.0
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+ wget
+ curl
+ jq
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+ @misc{bia,,
+ title = "BioImage Archive Downloading via ftp",
+ note = "https://www.ebi.ac.uk/bioimage-archive/help-download/",
+ url = "https://www.ebi.ac.uk/bioimage-archive/help-download/"}
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diff -r 000000000000 -r ff80c1b5816b test-data/ftpLink.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ftpLink.txt Fri Mar 07 14:25:06 2025 +0000
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+ftp://ftp.ebi.ac.uk/biostudies/fire/S-JCBD-/S-JCBD-xxx038/S-JCBD-201309038