view complementBed.xml @ 12:c782e0edc4f1 draft default tip

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<tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command>
        complementBed
        -d $distance
        -g genome
        &gt; $output
    </command>
    <inputs>
        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
        <expand macro="genome" />
    </inputs>
    <outputs>
        <data format_source="inputA" name="output" metadata_source="inputA" label="Complemen of ${inputA.name}"/>
    </outputs>
    <help>

**What it does**

bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.

.. image:: $PATH_TO_IMAGES/complement-glyph.png

@REFERENCES@
    </help>
</tool>