Mercurial > repos > bgruening > bedtools_test_bag
view randomBed.xml @ 12:c782e0edc4f1 draft default tip
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author | bgruening |
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date | Thu, 19 Jun 2014 10:12:00 -0400 |
parents | 75d323631dce |
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<tool id="bedtools_randombed" name="RandomBed" version="@WRAPPER_VERSION@.0"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <expand macro="stdio" /> <command> bedtools random -g $genome -l $length -n $intervals #if $seed.choose: -seed $seed.seed #end if </command> <inputs> <expand macro="genome" /> <param name="length" type="integer" value="100" label="The length of the intervals to generate." /> <param name="intervals" type="integer" value="1000000" label="The number of intervals to generate." /> <expand macro="seed" /> </inputs> <outputs> <data format="bed" name="output" /> </outputs> <help> **What it does** bedtools random will generate a random set of intervals in BED6 format. One can specify both the number (-n) and the size (-l) of the intervals that should be generated. @REFERENCES@ </help> </tool>