diff BedToBam.xml @ 12:c782e0edc4f1 draft default tip

Uploaded

--- a/BedToBam.xml	Wed Jun 18 15:07:04 2014 -0400
+++ b/BedToBam.xml	Thu Jun 19 10:12:00 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="bedtools_bedtobam" name="Convert from BED to BAM" version="0.1.0">
+<tool id="bedtools_bedtobam" name="Convert from BED to BAM" version="@WRAPPER_VERSION@.0">
     <description></description>
     <macros>
         <import>macros.xml</import>
@@ -12,14 +12,12 @@
         -mapq $mapq
         -i '$input'
         &gt; '$output'
-
     </command>
     <inputs>
         <param format="bed" name="input" type="data" label="Convert the following BED file to BAM"/>
         <param name="bed12" type="boolean" label="Indicate that the input BED file is in BED12 (a.k.a “blocked” BED) format" truevalue="-bed12" falsevalue="" checked="false" help="If Selected, bedToBam will convert blocked BED features (e.g., gene annotaions) into “spliced” BAM alignments by creating an appropriate CIGAR string.."/>
         <param name="mapq" type="integer" label="Set a mapping quality (SAM MAPQ field) value for all BED entries" value="255" />
         <param name="ubam" type="boolean" label="Write uncompressed BAM output." truevalue="-ubam" falsevalue="" checked="false"/>
-
     </inputs>
     <outputs>
         <data format="bam" name="output" metadata_source="input" label="${input.name} (as BAM)"/>