Mercurial > repos > bgruening > bedtools_test_bag
diff mergeBed.xml @ 6:75d323631dce draft
Uploaded
| author | bernhardlutz |
|---|---|
| date | Wed, 18 Jun 2014 12:40:28 -0400 |
| parents | b78d20957e7f |
| children |
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--- a/mergeBed.xml Thu Jun 05 15:25:18 2014 -0400 +++ b/mergeBed.xml Wed Jun 18 12:40:28 2014 -0400 @@ -18,7 +18,7 @@ > $output </command> <inputs> - <param name="input" format="bed,gff,vcf" type="data" label="Sort the following BED file"/> + <param name="input" format="bed,gff,vcf" type="data" label="Sort the following BED/VCF/GFF file"/> <param name="strandedness" type="boolean" label="Force strandedness." truevalue="-s" falsevalue="" checked="false" help="That is, only merge features that are the same strand."/> <param name="report_number" type="boolean" label="Report the number of BED entries that were merged." truevalue="-n" falsevalue="" checked="false" @@ -29,15 +29,9 @@ <param name="distance" type="integer" value="0" label="Maximum distance between features allowed for features to be merged." help="That is, overlapping and/or book-ended features are merged."/> <param name="scores" type="select" label="Report the scores of the merged features as"> - <option value="none">Do not report at all</option> + <option value="none" selected="True">Do not report at all</option> <option value="sum">Sum</option> - <option value="min">Min</option> - <option value="max">Max</option> - <option value="mean">Mean</option> - <option value="median">Median</option> - <option value="mode">Mode</option> - <option value="antimode">Antimode</option> - <option value="collapse">Semicolon separated list</option> + <expand macro="math_options" /> </param> </inputs> <outputs>