Mercurial > repos > bgruening > bedtools_test_bag
comparison groupbyBed.xml @ 12:c782e0edc4f1 draft default tip
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 19 Jun 2014 10:12:00 -0400 |
| parents | 75d323631dce |
| children |
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| 11:e526617a6bb9 | 12:c782e0edc4f1 |
|---|---|
| 1 <tool id="bedtools_groupbybed" name="GroupByBed" version="0.2.0"> | 1 <tool id="bedtools_groupbybed" name="GroupByBed" version="@WRAPPER_VERSION@.0"> |
| 2 <description></description> | 2 <description></description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 19 <param name="group" type="text" value="1,2,3" label="Specifies which column(s) (1-based) should be used to group the input. Columns may be comma-separated with each column must be explicitly listed. Or, ranges (e.g. 1-4) are also allowed." /> | 19 <param name="group" type="text" value="1,2,3" label="Specifies which column(s) (1-based) should be used to group the input. Columns may be comma-separated with each column must be explicitly listed. Or, ranges (e.g. 1-4) are also allowed." /> |
| 20 <param name="operation" type="select" label="Specify the operation"> | 20 <param name="operation" type="select" label="Specify the operation"> |
| 21 <option value="sum" selected="True">Sum - numeric only</option> | 21 <option value="sum" selected="True">Sum - numeric only</option> |
| 22 <option value="stdev">Stdev - numeric only</option> | 22 <option value="stdev">Stdev - numeric only</option> |
| 23 <option value="sstdev">Sstdev - numeric only</option> | 23 <option value="sstdev">Sstdev - numeric only</option> |
| 24 <option value="freqasc">Freqasc - print a comma separated list of values observed and the number of times they were observed. | 24 <option value="freqasc">Freqasc - print a comma separated list of values observed and the number of times they were observed. Reported in ascending order of frequency*</option> |
| 25 Reported in ascending order of frequency* | 25 <option value="freqdesc">Freqdesc - - print a comma separated list of values observed and the number of times they were observed. Reported in descending order of frequency*</option> |
| 26 </option> | |
| 27 <option value="freqdesc">Freqdesc - - print a comma separated list of values observed and the number of times they were observed. | |
| 28 Reported in descending order of frequency* | |
| 29 </option> | |
| 30 <option value="first">First - numeric or text</option> | 26 <option value="first">First - numeric or text</option> |
| 31 <option value="last">Last - numeric or text</option> | 27 <option value="last">Last - numeric or text</option> |
| 32 <expand macro="math_options" /> | 28 <expand macro="math_options" /> |
| 33 <expand macro="additional_math_options" /> | 29 <expand macro="additional_math_options" /> |
| 34 | |
| 35 </param> | 30 </param> |
| 36 </inputs> | 31 </inputs> |
| 37 <outputs> | 32 <outputs> |
| 38 <data format_source="inputA" name="output" metadata_source="inputA" label=""/> | 33 <data format_source="inputA" name="output" metadata_source="inputA" label=""/> |
| 39 </outputs> | 34 </outputs> |