comparison clusterBed.xml @ 12:c782e0edc4f1 draft default tip

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11:e526617a6bb9

<tool id="bedtools_clusterbed" name="ClusterBed" version="0.2.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

        -i $inputA
        > $output
    </command>
    <inputs>
        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>

        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness." help="That is, only cluster features that are the same strand. By default, this is disabled." />
        <param name="distance" type="integer" value="0" label="Maximum distance between features allowed for features to be clustered" help="Default is 0. That is, overlapping and/or book-ended features are clustered." />
    </inputs>
    <outputs>
        <data format_source="inputA" name="output" metadata_source="inputA" label=""/>
    </outputs>
    <help>

12:c782e0edc4f1

<tool id="bedtools_clusterbed" name="ClusterBed" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

        -i $inputA
        > $output
    </command>
    <inputs>
        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness." 
            help="That is, only cluster features that are the same strand. By default, this is disabled." />
        <param name="distance" type="integer" value="0" 
            label="Maximum distance between features allowed for features to be clustered" 
            help="Default is 0. That is, overlapping and/or book-ended features are clustered." />
    </inputs>
    <outputs>
        <data format_source="inputA" name="output" metadata_source="inputA" label=""/>
    </outputs>
    <help>