Mercurial > repos > bgruening > bedtools_test_bag

annotate complementBed.xml @ 12:c782e0edc4f1 draft default tip

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author bgruening
date Thu, 19 Jun 2014 10:12:00 -0400
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1 <tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.0">
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2 <description></description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <expand macro="stdio" />
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8 <command>
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9 complementBed
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10 -d $distance
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11 -g genome
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12 &gt; $output
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13 </command>
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14 <inputs>
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15 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
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16 <expand macro="genome" />
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17 </inputs>
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18 <outputs>
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19 <data format_source="inputA" name="output" metadata_source="inputA" label="Complemen of ${inputA.name}"/>
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20 </outputs>
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21 <help>
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22
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23 **What it does**
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24
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25 bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.
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26
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27 .. image:: $PATH_TO_IMAGES/complement-glyph.png
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28
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29 @REFERENCES@
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30 </help>
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31 </tool>