Mercurial > repos > bgruening > bamhash

changeset 4:37a9f9f502a2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bamhash commit 95a9df153f7396894dc7ba2eceb8660fc728b87d
author bgruening
date Tue, 04 Oct 2016 22:58:08 -0400
parents 27f5da0a6bd9
children
files bamhash.xml tool_dependencies.xml
diffstat 2 files changed, 1 insertions(+), 36 deletions(-) [+]
line wrap: on
line diff
--- a/bamhash.xml	Thu Sep 17 08:00:22 2015 -0400
+++ b/bamhash.xml	Tue Oct 04 22:58:08 2016 -0400
@@ -157,6 +157,5 @@
 .. _github: https://github.com/DecodeGenetics/BamHash
 
     ]]></help>
-    <citations>
-    </citations>
+    <citations></citations>
 </tool>
--- a/tool_dependencies.xml	Thu Sep 17 08:00:22 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,34 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="bamhash" version="1.1">
-        <install version="1.0">
-            <actions>
-                <action target_filename="BamHash-dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz"
-                    type="download_by_url">https://github.com/DecodeGenetics/BamHash/archive/dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>bamhash_checksum_bam</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>bamhash_checksum_fasta</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>bamhash_checksum_fastq</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable name="PILEOMETH_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                </action>
-            </actions>
-        </install>
-            <readme>
-        <![CDATA[
-            BamHash: Hash BAM and FASTQ files to verify data integrity
-            See https://github.com/DecodeGenetics/BamHash
-        ]]>
-        </readme>
-    </package>
-</tool_dependency>