# HG changeset patch
# User bgruening
# Date 1386177950 18000
# Node ID d2689bbb8d166b53d5faaba35aa95fc7194af0e4
# Parent  7e8adb61b76e867255b4e97c3969bd8ea10ade75
Uploaded

diff -r 7e8adb61b76e -r d2689bbb8d16 augustus.xml
--- a/augustus.xml	Wed Dec 04 11:57:54 2013 -0500
+++ b/augustus.xml	Wed Dec 04 12:25:50 2013 -0500
@@ -59,12 +59,12 @@
             --species=$organism
             ##--outfile=$output
         | tee $output 
-        #if $protein or $codingseq:
+        #if 'protein' in str($outputs).split(',') or 'codingseq' in str($outputs).split(','):
             | python \$AUGUSTUS_SCRIPT_PATH/extract_features.py
-                #if $protein:
+                #if 'protein' in str($outputs).split(','):
                     --protein $protein_output
                 #end if
-                #if $codingseq:
+                #if 'codingseq' in str($outputs).split(','):
                     --codingseq $codingseq_output
                 #end if
         #end if