Mercurial > repos > bgruening > augustus

diff augustus.xml @ 8:d2689bbb8d16 draft

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Uploaded
author bgruening
date Wed, 04 Dec 2013 12:25:50 -0500
parents 7e8adb61b76e
children 4611e8073293
line wrap: on
line diff
--- a/augustus.xml	Wed Dec 04 11:57:54 2013 -0500
+++ b/augustus.xml	Wed Dec 04 12:25:50 2013 -0500
@@ -59,12 +59,12 @@
             --species=$organism
             ##--outfile=$output
         | tee $output 
-        #if $protein or $codingseq:
+        #if 'protein' in str($outputs).split(',') or 'codingseq' in str($outputs).split(','):
             | python \$AUGUSTUS_SCRIPT_PATH/extract_features.py
-                #if $protein:
+                #if 'protein' in str($outputs).split(','):
                     --protein $protein_output
                 #end if
-                #if $codingseq:
+                #if 'codingseq' in str($outputs).split(','):
                     --codingseq $codingseq_output
                 #end if
         #end if