changeset 18:c87f223b0ad9 draft

Uploaded

--- a/tool_dependencies.xml	Fri Oct 11 19:24:56 2013 -0400
+++ b/tool_dependencies.xml	Sat Oct 12 08:02:10 2013 -0400
@@ -9,6 +9,10 @@
     <package name="muscle" version="3.8.31">
         <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="biopython" version="1.62">
+        <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
 
     <package name="helperlibs" version="0.1.2">
         <install version="1.0">
@@ -26,6 +30,24 @@
             helperlibs python library
         </readme>
     </package>
+
+    <package name="pyquery" version="1.2.6">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://pypi.python.org/packages/source/p/pyquery/pyquery-1.2.6.zip</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            helperlibs python library
+        </readme>
+    </package>
+
     <package name="straight.plugin" version="1.4.0-post-1">
         <install version="1.0">
             <actions>