# HG changeset patch # User bgruening # Date 1381392026 14400 # Node ID 9cfa2fb488b094e4236cdac264459aebda96bdfc # Parent 0d7484be1b6fecb04b232ee01a820bcd08cb1131 Uploaded diff -r 0d7484be1b6f -r 9cfa2fb488b0 antismash.xml --- a/antismash.xml Wed Oct 09 17:33:23 2013 -0400 +++ b/antismash.xml Thu Oct 10 04:00:26 2013 -0400 @@ -13,8 +13,8 @@ --input $infile --cpus 4 - #set $type_list = ','.join([$type for $type in $types]) - --enable $type_list + ##set $type_list = ','.join([$type for $type in $types]) + --enable $types --input-type nucl $smcogs $clusterblast diff -r 0d7484be1b6f -r 9cfa2fb488b0 tool_dependencies.xml --- a/tool_dependencies.xml Wed Oct 09 17:33:23 2013 -0400 +++ b/tool_dependencies.xml Thu Oct 10 04:00:26 2013 -0400 @@ -36,6 +36,8 @@ $INSTALL_DIR/run_antismash.py + https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz + tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast @@ -47,6 +49,8 @@ $INSTALL_DIR/run_antismash.py + https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz + tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast @@ -71,10 +75,8 @@ $INSTALL_DIR/run_antismash.py - - - - + https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz + tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast