# HG changeset patch
# User bgruening
# Date 1381392026 14400
# Node ID 9cfa2fb488b094e4236cdac264459aebda96bdfc
# Parent 0d7484be1b6fecb04b232ee01a820bcd08cb1131
Uploaded
diff -r 0d7484be1b6f -r 9cfa2fb488b0 antismash.xml
--- a/antismash.xml Wed Oct 09 17:33:23 2013 -0400
+++ b/antismash.xml Thu Oct 10 04:00:26 2013 -0400
@@ -13,8 +13,8 @@
--input $infile
--cpus 4
- #set $type_list = ','.join([$type for $type in $types])
- --enable $type_list
+ ##set $type_list = ','.join([$type for $type in $types])
+ --enable $types
--input-type nucl
$smcogs
$clusterblast
diff -r 0d7484be1b6f -r 9cfa2fb488b0 tool_dependencies.xml
--- a/tool_dependencies.xml Wed Oct 09 17:33:23 2013 -0400
+++ b/tool_dependencies.xml Thu Oct 10 04:00:26 2013 -0400
@@ -36,6 +36,8 @@
$INSTALL_DIR/run_antismash.py
+ https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz
+ tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast
@@ -47,6 +49,8 @@
$INSTALL_DIR/run_antismash.py
+ https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz
+ tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast
@@ -71,10 +75,8 @@
$INSTALL_DIR/run_antismash.py
-
-
-
-
+ https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz
+ tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast