ARBH01000003.1 - 1 clusters - antiSMASH results

# HG changeset patch # User bgruening # Date 1596982463 0 # Node ID 1bd412e72a7e4036c0705a02fd92d167dfb78f4f # Parent ed97258d0be41b34005fa0a8aa2a9964da1605b3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 19cbd26d33334a903a2028d463b2132cdd1f7e57" diff -r ed97258d0be4 -r 1bd412e72a7e antismash.xml --- a/antismash.xml Sat Feb 10 05:52:26 2018 -0500 +++ b/antismash.xml Sun Aug 09 14:14:23 2020 +0000 @@ -1,12 +1,14 @@ - + allows the genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters - antismash + antismash antismash --version - - - - + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - + label="Run active site finder analysus" /> + + + + + + + + + + @@ -116,8 +145,14 @@ + + + + + + - + diff -r ed97258d0be4 -r 1bd412e72a7e test-data/index.2.html --- a/test-data/index.2.html Sat Feb 10 05:52:26 2018 -0500 +++ b/test-data/index.2.html Sun Aug 09 14:14:23 2020 +0000 @@ -1,273 +1,114 @@ - - - - ARBH01000003.1 - 1 clusters - antiSMASH results - - - - - - -

Identified secondary metabolite clusters

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Cluster	Type	From	To	Most similar known cluster	MIBiG BGC-ID
The following clusters are from record ARBH01000003.1:
Cluster 1	T1pks	1	3500	-	-

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ARBH01000003 - Cluster 1 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:: (mal)
ctg1_1: PKS signature: mal; Minowa: mal; consensus: mal

Gene cluster description

Download cluster GenBank file

ARBH01000003 - Gene Cluster 1. Type = t1pks. Location: 1 - 3500 nt. Click on genes for more information.

Show pHMM detection rules used

t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

Detailed annotation

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- If you have found antiSMASH useful, please cite us. + +

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+ + antiSMASH version 5.1.2 +

- - - - - - - - - - + + + - $('.clusterblast-selector').change(function() { - var id = $(this).attr('id').replace('-select', ''); - var url = $(this).val(); - $.get(url, function(data) { - $('#' + id + '-svg').html(data); - clusterblast.init(id + '-svg'); - // id = - }, 'html'); - $('#' + id + '-download').off('click'); - $('#' + id + '-download').click(function () { - var url = $("#" + id + "-select").val(); - window.open(url, '_blank'); - }); - }); - - $('.domainalign-selector').change(function() { - var id = $(this).attr('id').replace('-select', ''); - var url = $(this).val(); - $.get(url, function(data) { - $('#' + id + '-svg').html(data); - domainalign.init(id + '-svg'); - // id = - }, 'html'); - $('#' + id + '-download').off('click'); - $('#' + id + '-download').click(function () { - var url = $("#" + id + "-select").val(); - window.open(url, '_blank'); - }); - }); - - $('.cluster-rules-header').click(toggle_cluster_rules); - - switch_to_cluster(); - -}); - - - + + \ No newline at end of file diff -r ed97258d0be4 -r 1bd412e72a7e test-data/index.html --- a/test-data/index.html Sat Feb 10 05:52:26 2018 -0500 +++ b/test-data/index.html Sun Aug 09 14:14:23 2020 +0000 @@ -1,273 +1,360 @@ + - - - ARBH01000003.1 - 1 clusters - antiSMASH results - - - - -

- antibiotics & Secondary Metabolite Analysis SHell
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