comparison tool_dependencies.xml @ 0:7ad005dfbe78 draft

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0:7ad005dfbe78

<?xml version="1.0"?>
<tool_dependency>
    <package name="blast+" version="2.2.28">
        <repository changeset_revision="d794cb2b0f45" name="package_blast_plus_2_2_28" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="hmmer " version="2.3.2">
        <repository changeset_revision="64510d86d77d" name="package_hmmer_2_3_2" owner="lionelguy" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="hmmer" version="3.0">
        <repository changeset_revision="3bc37773c609" name="package_hmmer_3_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="muscle" version="3.8.31">
        <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="antismash" version="2.0.2">
        <install version="1.0">
           <actions_group>
                <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. -->
                <actions os="darwin">
                    <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                    <action type="chmod">
                        <file mode="750">$INSTALL_DIR/run_antismash.py</file>
                    </action>
                </actions>
                <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                    <action type="chmod">
                        <file mode="750">$INSTALL_DIR/run_antismash.py</file>
                    </action>
                </actions>
                <!-- Download the binaries for AntiSmash compatible with 32-bit Linux. -->
                <actions architecture="i386" os="linux">
                    <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.i686.tar.bz2</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                    <action type="chmod">
                        <file mode="750">$INSTALL_DIR/run_antismash.py</file>
                    </action>
                </actions>
                <action type="setup_virtualenv">biopython=1.62
helperlibs=0.1.2
straight.plugin=1.4.0-post-1</action>

                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
            AntiSmash installation with all dependencies.
        </readme>
    </package>
</tool_dependency>