Mercurial > repos > bgruening > antismash

comparison tool_dependencies.xml @ 8:5d4078513d71 draft

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Uploaded
author bgruening
date Wed, 09 Oct 2013 04:14:07 -0400
parents 05cbf681c948
children b11e1dfbc7c9
comparison
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7:05cbf681c948 8:5d4078513d71
16 <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="antismash_python_deps" version="2.0.2"> 18 <package name="antismash_python_deps" version="2.0.2">
19 <install version="1.0"> 19 <install version="1.0">
20 <actions> 20 <actions>
21 <action type="setup_virtualenv">helperlibs=0.1.2 21 <action type="setup_virtualenv">helperlibs==0.1.2
22 straight.plugin=1.4.0-post-1</action> 22 straight.plugin==1.4.0-post-1</action>
23 </actions> 23 </actions>
24 </install> 24 </install>
25 <readme> 25 <readme>
26 AntiSmash python dependencies (helperlibs and straight.plugin) 26 AntiSmash python dependencies (helperlibs and straight.plugin)
27 </readme> 27 </readme>
28 </package> 28 </package>
29 <package name="antismash" version="2.0.2"> 29 <package name="antismash" version="2.0.2">
30 <install version="1.0"> 30 <install version="1.0">
31 <actions_group> 31 <actions_group>
32 <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. --> 32 <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. -->
33 <actions os="darwin"> 33 <actions architecture="x86_64" os="darwin">
34 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action>
35 <action type="move_directory_files">
36 <source_directory>.</source_directory>
37 <destination_directory>$INSTALL_DIR</destination_directory>
38 </action>
39 <action type="chmod">
40 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
41 </action>
42 </actions>
43 <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. -->
44 <actions architecture="i386" os="darwin">
34 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action> 45 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action>
35 <action type="move_directory_files"> 46 <action type="move_directory_files">
36 <source_directory>.</source_directory> 47 <source_directory>.</source_directory>
37 <destination_directory>$INSTALL_DIR</destination_directory> 48 <destination_directory>$INSTALL_DIR</destination_directory>
38 </action> 49 </action>
42 </actions> 53 </actions>
43 <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. --> 54 <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
44 <actions architecture="x86_64" os="linux"> 55 <actions architecture="x86_64" os="linux">
45 <action target_filename="antismash-2.0.2.tar.bz2" type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action> 56 <action target_filename="antismash-2.0.2.tar.bz2" type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
46 <action type="move_directory_files"> 57 <action type="move_directory_files">
47 <source_directory>.</source_directory> 58 <source_directory>antismash-2.0.2/*</source_directory>
48 <destination_directory>$INSTALL_DIR</destination_directory> 59 <destination_directory>$INSTALL_DIR</destination_directory>
49 </action> 60 </action>
50 <action type="chmod"> 61 <action type="chmod">
51 <file mode="750">$INSTALL_DIR/run_antismash.py</file> 62 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
52 </action> 63 </action>
53 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action> 64 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action>
54 <action type="move_directory_files"> 65 <action type="move_directory_files">
55 <source_directory>.</source_directory> 66 <source_directory>.</source_directory>
56 <destination_directory>$INSTALL_DIR/antismash-2.0.2/antismash/generic_modules/clusterblast</destination_directory> 67 <destination_directory>$INSTALL_DIR/antismash/generic_modules/clusterblast</destination_directory>
57 </action> 68 </action>
58 </actions> 69 </actions>
59 <!-- Download the binaries for AntiSmash compatible with 32-bit Linux. --> 70 <!-- Download the binaries for AntiSmash compatible with 32-bit Linux. -->
60 <actions architecture="i386" os="linux"> 71 <actions architecture="i386" os="linux">
61 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.i686.tar.bz2</action> 72 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.i686.tar.bz2</action>
67 <file mode="750">$INSTALL_DIR/run_antismash.py</file> 78 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
68 </action> 79 </action>
69 </actions> 80 </actions>
70 81
71 <actions> 82 <actions>
72 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action> 83
73 <action type="move_directory_files">
74 <source_directory>.</source_directory>
75 <destination_directory>$INSTALL_DIR</destination_directory>
76 </action>
77 <action type="chmod">
78 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
79 </action>
80 </actions> 84 </actions>
81 85
82 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> 86 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
83 <action type="set_environment"> 87 <action type="set_environment">
84 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> 88 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>