view umiout.sh @ 13:18d6b8c65512 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 1971e35a365a91ae36c990b374a552a46196e888

#!/usr/bin/bash

set -e

mkdir -p fixed;
for file in ./umiout/*;
do
prefix="${file%.dot.gz}";
prefix="${prefix/.\/umiout\//}";
gunzip "$file";
sed "s/umiout\/$prefix.dot.gz/$prefix/" "umiout/$prefix.dot" > "fixed/$prefix.dot";
dot -Tpdf "fixed/$prefix.dot" -o "fixed/$prefix.pdf";
done
ls fixed