Mercurial > repos > bgruening > agat

annotate test-data/test01_stats.txt @ 5:ea6d46165f3a draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit df456b8d319fd0a629829fba0f5819117b7936d3
author bgruening
date Fri, 18 Oct 2024 13:34:17 +0000
parents cc46560b4992
children
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cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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1 --------------------------------------------------------------------------------
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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2
2
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
parents: 0
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3 ---------------------------------- transcript ----------------------------------
0
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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4 Number of gene 379
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
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5 Number of transcript 379
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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6 Number of cds 376
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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7 Number of exon 379
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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8 Number of exon in cds 376
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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9 Number gene overlapping 62
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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10 Number of single exon gene 379
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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11 Number of single exon transcript 379
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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12 mean transcripts per gene 1.0
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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13 mean cdss per transcript 1.0
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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14 mean exons per transcript 1.0
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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15 mean exons per cds 1.0
2
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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16 Total gene length (bp) 342644
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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17 Total transcript length (bp) 342644
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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18 Total cds length (bp) 342338
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
parents: 0
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19 Total exon length (bp) 342644
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
parents: 0
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20 mean gene length (bp) 904
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
parents: 0
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21 mean transcript length (bp) 904
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
parents: 0
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22 mean cds length (bp) 910
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
parents: 0
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23 mean exon length (bp) 904
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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24 mean cds piece length (bp) 910
0
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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25 % of genome covered by gene 33.1
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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26 % of genome covered by transcript 33.1
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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27 % of genome covered by cds 33.1
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
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28 % of genome covered by exon 33.1
2
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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29 Longest gene (bp) 9499
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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30 Longest transcript (bp) 9499
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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31 Longest cds (bp) 9499
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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32 Longest exon (bp) 9499
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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33 Longest cds piece (bp) 9499
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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34 Shortest gene (bp) 54
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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35 Shortest transcript (bp) 54
cc46560b4992 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
bgruening
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36 Shortest cds piece (bp) 54
0
cffa21bb7a92 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
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37