# HG changeset patch
# User bernhardlutz
# Date 1387834088 18000
# Node ID 6c536f6011fdf8619acffe4b6293262cf59cab76
# Parent  0acb69966d7cc891a48b606ba460dacd38e18009
Deleted selected files

diff -r 0acb69966d7c -r 6c536f6011fd rnaz.xml
--- a/rnaz.xml	Sun Dec 22 12:32:51 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<tool id="rnaz" name="RNAz" version="0.1.0">
-    <description></description>
-    <requirements>
-        <requirement type="package" version="1.0">rnaz</requirement>
-    </requirements>
-    <command>
-RNAz $inputaln $outfile
-    </command>
-    <stdio>
-        <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
-        <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" />
-    </stdio>
-    <inputs>
-        <param format="aln" name="inputaln" type="data" label="Input Alignment File" />
-    </inputs>
-    <outputs>
-        <data name="outfile" format="txt" />
-    </outputs>
-    <help>**What it does**
-     RNAz is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. It can be used in genome wide screens to detect functional RNA structures, as found in noncoding RNAs and cis-acting regulatory elements of mRNAs.
-    </help>
-</tool>
diff -r 0acb69966d7c -r 6c536f6011fd tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Dec 22 12:32:51 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,14 +0,0 @@
-<tool_dependency>
-    <package name="rnaz" version="2.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
-                <action type="autoconf" />
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>Compiling RNAz requires a C compiler (typically gcc)</readme>
-    </package>
-</tool_dependency>