Mercurial > repos > bernhardlutz > rnaz

diff rnaz.xml @ 10:87f6ce525479 draft default tip

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Uploaded
author bernhardlutz
date Thu, 09 Jan 2014 16:11:17 -0500
parents c614f623f8f5
children
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--- a/rnaz.xml	Mon Dec 23 17:26:33 2013 -0500
+++ b/rnaz.xml	Thu Jan 09 16:11:17 2014 -0500
@@ -4,7 +4,7 @@
         <requirement type="package" version="2.1">rnaz</requirement>
     </requirements>
     <command>
-RNAz $inputaln $outfile
+RNAz $inputaln > $outfile
     </command>
     <stdio>
         <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
@@ -18,5 +18,9 @@
     </outputs>
     <help>**What it does**
      RNAz is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. It can be used in genome wide screens to detect functional RNA structures, as found in noncoding RNAs and cis-acting regulatory elements of mRNAs.
+     
+     Gruber AR, Findeiss, Washietl S, Hofacker IL, and Stadler PF. 
+RNAz 2.0: Improved noncoding rna detection. 
+Pac Symp Biocomput, 2010. 15:69–79.
     </help>
 </tool>