# HG changeset patch
# User bernhardlutz
# Date 1395683997 14400
# Node ID 954a489c1606e32c8b54d960f395e32cbc0e6d6f
# Parent  a9793e52a3ef44bc789b1bd0908329728a582e77
Deleted selected files

diff -r a9793e52a3ef -r 954a489c1606 rest_tool.py
--- a/rest_tool.py	Sun Mar 23 09:27:27 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,31 +0,0 @@
-#!/usr/bin/env python
-# Aufruf convert_graph.py --type type --id id  --outformat format
-
-import sys, os
-import networkx as nx
-import argparse
-import json
-
-from xgmml_networkx import XGMMLParserHelper, XGMMLWriter
-from networkx.readwrite import json_graph
-
-#supported graph_types
-output_types = ["tsv", "csv", "png", "json", "txt", "xml", "sdf", "asnt", "asnb", "jsonp"]
-
-def main(args):
-    
-if __name__ == "__main__":
-    
-    parser = argparse.ArgumentParser()
-    parser.add_argument('--type', type=str,
-        help="That you want BioAssay Compund ...")
-    parser.add_argument('--id', type=str,
-        help="Specify the format of the input graph")
-    parser.add_argument('--outformat', type=str,
-        help="Specify the format of the output", choices = output_types)
-    if len(sys.argv) < 6:
-        print "Too few arguments..."
-        parser.print_help()
-        exit(1)
-    args = parser.parse_args()
-    main( args )
diff -r a9793e52a3ef -r 954a489c1606 rest_tool.xml
--- a/rest_tool.xml	Sun Mar 23 09:27:27 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-<tool id="rest_tool" name="Fetch Data from pubchem" version="0.1.0">
-    <description>Fetch pubchem data</description>
-    <version_command>echo "0.1.0"</version_command>
-    <requirements>
-        <requirement type="set_environment">REST_TOOL_SCRIPT_PATH</requirement>
-    </requirements>
-    <command>
-        python \$GRAPHCONVERTER_SCRIPT_PATH/rest_tool.py --id $id --type $input_type --outformat $output_format
-    </command>
-
-    <inputs>
-        <param format="txt" name="id" type="text" label="Specify the ID" />
-        <param name="input_type" multiple="false" type="select" label="Input Type">
-            <option value="bioassay">BioAssay</option>
-            <option value="compound">Compound</option>
-        </param>
-        <param name="output_format" type="select" label="Output Format">
-                <option value="tsv">tsv</option>
-                <option value="csv">csv</option>
-                <option value="txt">txt</option>
-                <option value="png">png</option>
-                <option value="json">json</option>
-        </param>
-    </inputs>
-    <outputs>
-        <data format="csv" name="output">
-            <change_format>
-                <when input="output_format" value="tsv" format="tsv" />
-                <when input="output_format" value="png" format="png" />
-                <when input="output_format" value="csv" format="csv" />
-                <when input="output_format" value="txt" format="txt" />
-                <when input="output_format" value="json" format="json" />
-            </change_format>
-        </data>
-    </outputs>
-    <tests>
-    </tests>
-    <help>
-**What it does**
-
-This tool fetches data from pubchem
-    </help>
-</tool>
diff -r a9793e52a3ef -r 954a489c1606 test-data/bsp_graph.gml~
--- a/test-data/bsp_graph.gml~	Sun Mar 23 09:27:27 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,49 +0,0 @@
-    Creator "yFiles"  
-    Version 2.2  
-    graph  
-    [ hierarchic  1  
-      directed  1  
-      node  
-      [ id  0  
-        graphics  
-        [ x 200.0     
-          y 0.0  
-        ]  
-        LabelGraphics  
-        [ text  "January" ]  
-      ]  
-      node  
-      [ id  1  
-        graphics  
-        [ x 425.0  
-          y 75.0  
-        ]  
-        LabelGraphics  
-        [ text  "December"  ]  
-      ]  
-      edge  
-      [ source  1  
-        target  0  
-        graphics  
-        [ Line  
-          [ point  
-            [ x 425.0  
-              y 75.0  
-            ]  
-            point  
-            [ x 425.0  
-              y 0.0  
-            ]  
-            point  
-            [ x 200.0  
-              y 0.0  
-            ]  
-          ]  
-        ]  
-        LabelGraphics  
-        [ text  "Happy New Year!"  
-          model "six_pos"  
-          position  "head"  
-        ]  
-      ]  
-    ]  
diff -r a9793e52a3ef -r 954a489c1606 tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Mar 23 09:27:27 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-<tool_dependency>
-    <set_environment version="1.0">
-        <environment_variable name="REST_TOOL_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
-    </set_environment>
-</tool_dependency>