Mercurial > repos > bernhardlutz > rest_tool
comparison rest_tool_macros.xml @ 8:3c1e862e8cd6 draft
Uploaded
| author | bernhardlutz |
|---|---|
| date | Fri, 02 May 2014 05:40:28 -0400 |
| parents | 9ee84d9fd3a7 |
| children | 80bf0039c0dc |
comparison
equal
deleted
inserted
replaced
| 7:35b41070c20d | 8:3c1e862e8cd6 |
|---|---|
| 2 <xml name="aid_cid_sid"> | 2 <xml name="aid_cid_sid"> |
| 3 <option value="aids">AIDs</option> | 3 <option value="aids">AIDs</option> |
| 4 <option value="cids">CIDs</option> | 4 <option value="cids">CIDs</option> |
| 5 <option value="sids">SIDs</option> | 5 <option value="sids">SIDs</option> |
| 6 </xml> | 6 </xml> |
| 7 | 7 <xml name="acs_options"> |
| 8 <option value="assay">BioAssay</option> | |
| 9 <option value="compound">Compound</option> | |
| 10 <option value="substance">Substance</option> | |
| 11 </xml> | |
| 8 <xml name="cid_sid_type_options"> | 12 <xml name="cid_sid_type_options"> |
| 9 <option value="all">all</option> | 13 <option value="all">all</option> |
| 10 <option value="standardized">standardized</option> | 14 <option value="standardized">standardized</option> |
| 11 <option value="component">component</option> | 15 <option value="component">component</option> |
| 12 </xml> | 16 </xml> |
| 55 <xml name="option_compound_substance"> | 59 <xml name="option_compound_substance"> |
| 56 <option value="assaysummary">Assaysummary</option> | 60 <option value="assaysummary">Assaysummary</option> |
| 57 <option value="synonyms">Synonyms</option> | 61 <option value="synonyms">Synonyms</option> |
| 58 <option value="record">Record</option> | 62 <option value="record">Record</option> |
| 59 <option value="classification">Classification</option> | 63 <option value="classification">Classification</option> |
| 60 <option value="property">Property</option> | |
| 61 <option value="description">Discription</option> | 64 <option value="description">Discription</option> |
| 62 </xml> | 65 <option value="xrefs">Xrefs</option> |
| 63 | 66 </xml> |
| 64 | 67 <xml name="compound_properties"> |
| 65 | 68 <param name="property_compound" type="select" multiple="true" label="Specify Property"> |
| 69 <option value="MolecularFormula">MolecularFormula</option> | |
| 70 <option value="MolecularWeight">MolecularWeight</option> | |
| 71 <option value="CanonicalSMILES">CanonicalSMILES</option> | |
| 72 <option value="IsomericSMILES">IsomericSMILES</option> | |
| 73 <option value="InChI">InChI</option> | |
| 74 <option value="InChIKey">InChIKey</option> | |
| 75 <option value="IUPACName">IUPACName</option> | |
| 76 <option value="XLogP">XLogP</option> | |
| 77 <option value="ExactMass">ExactMass</option> | |
| 78 <option value="MonoisotopicMass">MonoisotopicMass</option> | |
| 79 <option value="TPSA">TPSA</option> | |
| 80 <option value="Complexity">Complexity</option> | |
| 81 <option value="Charge">Charge</option> | |
| 82 <option value="HBondDonorCount">HBondDonorCount</option> | |
| 83 <option value="HBondAcceptorCount">HBondAcceptorCount</option> | |
| 84 <option value="RotatableBondCount">RotatableBondCount</option> | |
| 85 <option value="HeavyAtomCount">HeavyAtomCount</option> | |
| 86 <option value="IsotopeAtomCount">IsotopeAtomCount</option> | |
| 87 <option value="AtomStereoCount">AomStereoCount</option> | |
| 88 <option value="DefinedAtomStereoCount">DefinedAtomStereoCount</option> | |
| 89 <option value="UndefinedAtomStereoCount">UndefinedAtomStereoCount</option> | |
| 90 <option value="BondStereoCount">BondStereoCount</option> | |
| 91 <option value="DefinedBondStereoCount">DefinedBondStereoCount</option> | |
| 92 <option value="UndefinedBondStereoCount">UndefinedBondStereoCount</option> | |
| 93 <option value="CovalentUnitCount">CovalentUnitCount</option> | |
| 94 <option value="Volume3D">lume3D</option> | |
| 95 <option value="XStericQuadrupole3D">XStericQuadrupole3D</option> | |
| 96 <option value="YStericQuadrupole3D">YStericQuadrupole3D</option> | |
| 97 <option value="ZStericQuadrupole3D">ZStericQuadrupole3D</option> | |
| 98 <option value="FeatureCount3D">FeatureCount3D</option> | |
| 99 <option value="FeatureAcceptorCount3D">FeatureAcceptorCount3D</option> | |
| 100 <option value="FeatureDonorCount3D">FeatureDonorCount3D</option> | |
| 101 <option value="FeatureAnionCount3D">FeatureAnionCount3D</option> | |
| 102 <option value="FeatureCationCount3D">FeatureCationCount3D</option> | |
| 103 <option value="FeatureRingCount3D">FeatureRingCount3D</option> | |
| 104 <option value="FeatureHydrophobeCount3D">FeatureHydrophobeCount3D</option> | |
| 105 <option value="ConformerModelRMSD3D">ConformerModelRMSD3D</option> | |
| 106 <option value="EffectiveRotorCount3D">EffectiveRotorCount3D</option> | |
| 107 <option value="ConformerCount3D">ConformerCount3D</option> | |
| 108 </param> | |
| 109 </xml> | |
| 110 <xml name="xref_select"> | |
| 111 <param name="xref_compound_select" label="Choose Xrefs" multiple="true" type="select"> | |
| 112 <expand macro="xref_options" /> | |
| 113 </param> | |
| 114 </xml> | |
| 115 | |
| 116 <xml name="xref_options"> | |
| 117 <option value="RegistryID">external registry identifier</option> | |
| 118 <option value="RN">registry number</option> | |
| 119 <option value="PubMedID">NCBI PubMed identifier</option> | |
| 120 <option value="MMDBID">NCBI MMDB identifier</option> | |
| 121 <option value="DBURL">external database home page URL</option> | |
| 122 <option value="SBURL">external database substance URL</option> | |
| 123 <option value="ProteinGI">NCBI protein GI</option> | |
| 124 <option value="NucleotideGI">NCBI nucleotide GI</option> | |
| 125 <option value="TaxonomyID">NCBI taxonomy identifier</option> | |
| 126 <option value="MIMID NCBI">MIM identifier</option> | |
| 127 <option value="GeneID NCBI">gene identifier</option> | |
| 128 <option value="ProbeID NCBI">probe identifier</option> | |
| 129 <option value="PatentID">patent identifier</option> | |
| 130 <option value="SourceName">external depositor name</option> | |
| 131 <option value="SourceCategory">depositor category(ies)</option> | |
| 132 </xml> | |
| 133 <xml name="field_or_file"> | |
| 134 <conditional name="field_or_file"> | |
| 135 <param name="field_or_file_select" multiple="false" type="select" label="Specify Identifiers by"> | |
| 136 <option value="field">Textfield</option> | |
| 137 <option value="file">File</option> | |
| 138 </param> | |
| 139 <when value="field"> | |
| 140 <param format="txt" name="id_value" type="text" area="true" size="10x40" label="Enter the Identifiers (one per line)" /> | |
| 141 </when> | |
| 142 <when value="file"> | |
| 143 <param format="txt,csv" name="id_value" type="data" label="Select file" /> | |
| 144 </when> | |
| 145 </conditional> | |
| 146 </xml> | |
| 147 <xml name="conditional_operation_compound"> | |
| 148 <conditional name="operation_compound"> | |
| 149 <param name="operation_compound_select" type="select" multiple="false" label="Operation"> | |
| 150 <expand macro="aid_cid_sid" /> | |
| 151 <expand macro="option_compound_substance" /> | |
| 152 <option value="property">Property</option> | |
| 153 </param> | |
| 154 <when value="property"> | |
| 155 <expand macro="compound_properties" /> | |
| 156 </when> | |
| 157 <when value="xrefs"> | |
| 158 <param name="xref_compound" label="Choose Xrefs" multiple="true" type="select"> | |
| 159 <expand macro="xref_options" /> | |
| 160 </param> | |
| 161 </when> | |
| 162 <when value="aids"> | |
| 163 <param name="ids_type_compound" multiple="false" type="select" label="AID Type"> | |
| 164 <expand macro="aids_when_options" /> | |
| 165 </param> | |
| 166 </when> | |
| 167 <when value="sids"> | |
| 168 <param name="ids_type_compound" multiple="false" type="select" label="SID Type"> | |
| 169 <expand macro="cid_sid_type_options" /> | |
| 170 </param> | |
| 171 </when> | |
| 172 <when value="cids"> | |
| 173 <param name="ids_type_compound" multiple="false" type="select" label="CID Type"> | |
| 174 <expand macro="cid_cid_type_options" /> | |
| 175 </param> | |
| 176 </when> | |
| 177 </conditional> | |
| 178 </xml> | |
| 179 <xml name="conditional_operation_assay"> | |
| 180 <conditional name="operation_assay"> | |
| 181 <param name="operation_assay_select" type="select" multiple="false" label="Operation"> | |
| 182 <expand macro="aid_cid_sid" /> | |
| 183 <option value="record">Record</option> | |
| 184 <option value="classification">Classification</option> | |
| 185 <option value="xrefs">Xrefs</option> | |
| 186 <option value="description">Discription</option> | |
| 187 <option value="summary">Summary</option> | |
| 188 <option value="targets">Targets</option> | |
| 189 </param> | |
| 190 <when value="xrefs"> | |
| 191 <param name="property_assay" label="Specify Property" type="text" /> | |
| 192 </when> | |
| 193 | |
| 194 <when value="targets"> | |
| 195 <param name="target_assay" label="Specify Target" type="select" multiple="true"> | |
| 196 <option value="ProteinGI">NCBI GI of a protein sequence</option> | |
| 197 <option value="ProteinName">Protein Name</option> | |
| 198 <option value="GeneID">NCBI Gene database identifier</option> | |
| 199 <option value="GeneSymbol">Gene Symbol</option> | |
| 200 </param> | |
| 201 </when> | |
| 202 <when value="aids"> | |
| 203 <param name="ids_type_assay" multiple="false" type="select" label="AID Type"> | |
| 204 <expand macro="aids_when_options" /> | |
| 205 </param> | |
| 206 </when> | |
| 207 <when value="cids"> | |
| 208 <param name="ids_type_assay" multiple="false" type="select" label="CID Type"> | |
| 209 <expand macro="aids_when_options" /> | |
| 210 | |
| 211 </param> | |
| 212 </when> | |
| 213 <when value="sids"> | |
| 214 <param name="ids_type_assay" multiple="false" type="select" label="SID Type"> | |
| 215 <expand macro="aids_when_options" /> | |
| 216 <option value="doseresponse">doseresponse</option> | |
| 217 </param> | |
| 218 </when> | |
| 219 </conditional> | |
| 220 </xml> | |
| 221 <xml name="conditional_operation_substance"> | |
| 222 <conditional name="operation_substance"> | |
| 223 <param name="operation_substance_select" type="select" multiple="false" label="Operation"> | |
| 224 <expand macro="aid_cid_sid" /> | |
| 225 <expand macro="option_compound_substance" /> | |
| 226 </param> | |
| 227 | |
| 228 <when value="xrefs"> | |
| 229 <param name="xref_substance" label="Choose Xrefs" multiple="true" type="select"> | |
| 230 <expand macro="xref_options" /> | |
| 231 </param> | |
| 232 </when> | |
| 233 <when value="aids"> | |
| 234 <param name="ids_type_substance" multiple="false" type="select" label="AID Type"> | |
| 235 <expand macro="aids_when_options" /> | |
| 236 </param> | |
| 237 </when> | |
| 238 <when value="cids"> | |
| 239 <param name="ids_type_substance" multiple="false" type="select" label="CID Type"> | |
| 240 <expand macro="sid_cid_type_options" /> | |
| 241 </param> | |
| 242 </when> | |
| 243 <when value="sids"> | |
| 244 <param name="ids_type_substance" multiple="false" type="select" label="SID Type"> | |
| 245 <expand macro="sid_sid_type_options" /> | |
| 246 </param> | |
| 247 </when> | |
| 248 | |
| 249 </conditional> | |
| 250 </xml> | |
| 66 </macros> | 251 </macros> |