Mercurial > repos > bernhardlutz > rest_tool

comparison rest_tool.py @ 8:3c1e862e8cd6 draft

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author bernhardlutz
date Fri, 02 May 2014 05:40:28 -0400
parents 9ee84d9fd3a7
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7:35b41070c20d 8:3c1e862e8cd6
4 import argparse 4 import argparse
5 5
6 import readfile 6 import readfile
7 7
8 txt_output=["cids", "aids", "sids", "synonyms" ] 8 txt_output=["cids", "aids", "sids", "synonyms" ]
9 csv_output=["assaysummary"] 9 csv_output=["assaysummary", "property"]
10 check_for_id_type=["cids", "aids", "sids"] 10 check_for_id_type=["cids", "aids", "sids"]
11 11
12 def main(args): 12 def main(args):
13 url="http://pubchem.ncbi.nlm.nih.gov/rest/pug/"+args.type+"/" 13 url="http://pubchem.ncbi.nlm.nih.gov/rest/pug/"+args.type+"/"
14 if args.type == "assay": 14 if args.type == "assay":
21 idstring=str(args.id) 21 idstring=str(args.id)
22 else: 22 else:
23 idlist=readfile.getListFromFile(args.id_file) 23 idlist=readfile.getListFromFile(args.id_file)
24 idstring=",".join(idlist) 24 idstring=",".join(idlist)
25 url+=idstring+"/"+args.operation+"/" 25 url+=idstring+"/"+args.operation+"/"
26 if args.operation == "property":
27 url+=args.property_value+"/"
26 if args.operation in csv_output: 28 if args.operation in csv_output:
27 url+="csv" 29 url+="csv"
28 elif args.operation in txt_output: 30 elif args.operation in txt_output:
29 url+="txt" 31 url+="txt"
30 else: 32 else: