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1 #!/usr/bin/env python
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2 # Aufruf convert_graph.py --type type --id id --outformat format
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3
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4 import sys, os
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5 import networkx as nx
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6 import argparse
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7 import json
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8
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9 from xgmml_networkx import XGMMLParserHelper, XGMMLWriter
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10 from networkx.readwrite import json_graph
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11
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12 #supported graph_types
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13 output_types = ["tsv", "csv", "png", "json", "txt", "xml", "sdf", "asnt", "asnb", "jsonp"]
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14
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15 def main(args):
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16
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17 if __name__ == "__main__":
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18
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19 parser = argparse.ArgumentParser()
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20 parser.add_argument('--type', type=str,
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21 help="That you want BioAssay Compund ...")
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22 parser.add_argument('--id', type=str,
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23 help="Specify the format of the input graph")
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24 parser.add_argument('--outformat', type=str,
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25 help="Specify the format of the output", choices = output_types)
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26 if len(sys.argv) < 6:
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27 print "Too few arguments..."
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28 parser.print_help()
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29 exit(1)
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30 args = parser.parse_args()
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31 main( args )
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